Roxana Zamudio
@roxana-zamudio.bsky.social
Senior Bioinformatician
Reposted by Roxana Zamudio
Read our new #ESPAUR report , which reveals the scale of the challenge of antibiotic resistance (AMR).
The UK is working toward ambitious targets in the National Action Plan 2024 to 29.
www.gov.uk/government/p...
The UK is working toward ambitious targets in the National Action Plan 2024 to 29.
www.gov.uk/government/p...
November 13, 2025 at 1:20 PM
Read our new #ESPAUR report , which reveals the scale of the challenge of antibiotic resistance (AMR).
The UK is working toward ambitious targets in the National Action Plan 2024 to 29.
www.gov.uk/government/p...
The UK is working toward ambitious targets in the National Action Plan 2024 to 29.
www.gov.uk/government/p...
Reposted by Roxana Zamudio
The recordings of the 6-hour webinar on Bacterial Strain Taxonomy for Genomic Surveillance are now available through the @ecdc.europa.eu ECDC Learning portal: learning.ecdc.europa.eu/course/view.... - cgMLST, SNPs, K-mer based strain nomenclatures applications and more!
Course: GenEpi-BioTrain - Virtual training 21 - Bacterial Strain Taxonomy for Genomic Surveillance
learning.ecdc.europa.eu
October 24, 2025 at 6:42 AM
The recordings of the 6-hour webinar on Bacterial Strain Taxonomy for Genomic Surveillance are now available through the @ecdc.europa.eu ECDC Learning portal: learning.ecdc.europa.eu/course/view.... - cgMLST, SNPs, K-mer based strain nomenclatures applications and more!
Reposted by Roxana Zamudio
🔔🔔Post-doc in microbial genomics with @modmedmicro.bsky.social🧬 - deadline tomorrow! Big genomic and clinical datasets to play with, friendly and very multidisciplinary team!
my.corehr.com/pls/uoxrecru...
my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
October 15, 2025 at 10:58 AM
🔔🔔Post-doc in microbial genomics with @modmedmicro.bsky.social🧬 - deadline tomorrow! Big genomic and clinical datasets to play with, friendly and very multidisciplinary team!
my.corehr.com/pls/uoxrecru...
my.corehr.com/pls/uoxrecru...
Reposted by Roxana Zamudio
We are running a hackathon at EBI in Feb: biomics.bacpop.org
If you are at EMBL, ETH Zurich, GRC or GIMM working on a biological problem in data science or programming, consider putting a project forwards!
If you are at EMBL, ETH Zurich, GRC or GIMM working on a biological problem in data science or programming, consider putting a project forwards!
BIOMICS hackathon at EMBL-EBI
Hackathon held in Hinxton 2026
biomics.bacpop.org
October 15, 2025 at 4:29 PM
We are running a hackathon at EBI in Feb: biomics.bacpop.org
If you are at EMBL, ETH Zurich, GRC or GIMM working on a biological problem in data science or programming, consider putting a project forwards!
If you are at EMBL, ETH Zurich, GRC or GIMM working on a biological problem in data science or programming, consider putting a project forwards!
Reposted by Roxana Zamudio
New research article
Estimating the association of antimicrobial resistance genes with minimum inhibitory concentration in Escherichia coli: an observational study
www.thelancet.com/journals/lan...
#IDSky #ClinMicro #AMR #WGS #OpenAccess #OA
Estimating the association of antimicrobial resistance genes with minimum inhibitory concentration in Escherichia coli: an observational study
www.thelancet.com/journals/lan...
#IDSky #ClinMicro #AMR #WGS #OpenAccess #OA
October 8, 2025 at 8:28 AM
New research article
Estimating the association of antimicrobial resistance genes with minimum inhibitory concentration in Escherichia coli: an observational study
www.thelancet.com/journals/lan...
#IDSky #ClinMicro #AMR #WGS #OpenAccess #OA
Estimating the association of antimicrobial resistance genes with minimum inhibitory concentration in Escherichia coli: an observational study
www.thelancet.com/journals/lan...
#IDSky #ClinMicro #AMR #WGS #OpenAccess #OA
Reposted by Roxana Zamudio
We have a fully funded PhD studentship available @modmedmicro.bsky.social in Oxford to work on a really cool project looking at population heterogeneity in bloodstream infections www.ndm.ox.ac.uk/study/dphil-... Please spread the word/get in touch if you'd like to chat.
DPhil project themes
www.ndm.ox.ac.uk
October 8, 2025 at 7:11 PM
We have a fully funded PhD studentship available @modmedmicro.bsky.social in Oxford to work on a really cool project looking at population heterogeneity in bloodstream infections www.ndm.ox.ac.uk/study/dphil-... Please spread the word/get in touch if you'd like to chat.
Reposted by Roxana Zamudio
Job opportunity for microbial genomicists interested in E. coli and Klebsiella infections and AMR 👀⬇️ - do get in touch if you might be interested! Closing date 7th Oct.
Come and work with Nicole Stoesser and I in Oxford with the fantastic team @modmedmicro.bsky.social - great opportunity for a postdoc in microbial genomics to do some creative research with great datasets as part of our HPRU.
my.corehr.com/pls/uoxrecru...
my.corehr.com/pls/uoxrecru...
Job Details
my.corehr.com
September 24, 2025 at 8:27 PM
Job opportunity for microbial genomicists interested in E. coli and Klebsiella infections and AMR 👀⬇️ - do get in touch if you might be interested! Closing date 7th Oct.
Reposted by Roxana Zamudio
Pleased to see this pre-printed, highlighting the completeness/accuracy of @nanoporetech.com long-read genome assembly for clinical Enterobacterales: www.biorxiv.org/content/10.1...
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
September 25, 2025 at 8:48 AM
Pleased to see this pre-printed, highlighting the completeness/accuracy of @nanoporetech.com long-read genome assembly for clinical Enterobacterales: www.biorxiv.org/content/10.1...
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
Thanks to colleagues @modmedmicro.bsky.social, @ukhsa.bsky.social, @genewiz.bsky.social and @oxfordbrc.bsky.social!
Reposted by Roxana Zamudio
PLEASE RETWEET.
The lab github is here: github.com/mol-evol/ so you can get an idea of what we have been working on recently (several projects are private at the moment, so this will be bigger soon) and the job ad is here: www.jobs.ac.uk/job/DOU184/p...
Postdoctoral Research Associate - Grade 7 at University of Liverpool
Apply now for the Postdoctoral Research Associate - Grade 7 role on jobs.ac.uk - the leading job board for higher education jobs. View details.
www.jobs.ac.uk
September 25, 2025 at 10:08 AM
PLEASE RETWEET.
Reposted by Roxana Zamudio
Delighted to see our paper studying the evolution of plasmids over the last 100 years, now out! Years of work by Adrian Cazares, also Nick Thomson @sangerinstitute.bsky.social - this version much improved over the preprint. Final version should be open access, apols.
Thread 1/n
Thread 1/n
September 25, 2025 at 9:29 PM
Delighted to see our paper studying the evolution of plasmids over the last 100 years, now out! Years of work by Adrian Cazares, also Nick Thomson @sangerinstitute.bsky.social - this version much improved over the preprint. Final version should be open access, apols.
Thread 1/n
Thread 1/n
Reposted by Roxana Zamudio
Code for PopPIPE here: github.com/bacpop/PopPIPE
Thanks to some thorough editing in review we ironed out some errors that can arise, made the installation simpler, and added more automated output from the transmission pipline steps
Thanks to some thorough editing in review we ironed out some errors that can arise, made the installation simpler, and added more automated output from the transmission pipline steps
April 30, 2025 at 4:38 PM
Code for PopPIPE here: github.com/bacpop/PopPIPE
Thanks to some thorough editing in review we ironed out some errors that can arise, made the installation simpler, and added more automated output from the transmission pipline steps
Thanks to some thorough editing in review we ironed out some errors that can arise, made the installation simpler, and added more automated output from the transmission pipline steps
Reposted by Roxana Zamudio
🎓 #PhDPosition !
🔬 Human Health Starts with Food: Genomic Tracking of Pathogens and Microbial Interactions in Poultry with Dr Nicol Janecko and Dr Matthew Gilmour
➡️ buff.ly/nlmkx4z
🔬 Human Health Starts with Food: Genomic Tracking of Pathogens and Microbial Interactions in Poultry with Dr Nicol Janecko and Dr Matthew Gilmour
➡️ buff.ly/nlmkx4z
April 2, 2025 at 7:00 PM
🎓 #PhDPosition !
🔬 Human Health Starts with Food: Genomic Tracking of Pathogens and Microbial Interactions in Poultry with Dr Nicol Janecko and Dr Matthew Gilmour
➡️ buff.ly/nlmkx4z
🔬 Human Health Starts with Food: Genomic Tracking of Pathogens and Microbial Interactions in Poultry with Dr Nicol Janecko and Dr Matthew Gilmour
➡️ buff.ly/nlmkx4z
Reposted by Roxana Zamudio
We need the help of academics, health & policy professionals, and people with lived experience of tuberculosis (TB) to shape our next TB Action Plan. Together we can improve how we prevent, detect, and control TB. 🛡️
🗓️ Deadline: 2 May
🔗 www.gov.uk/government/n...
🗓️ Deadline: 2 May
🔗 www.gov.uk/government/n...
April 2, 2025 at 1:05 PM
We need the help of academics, health & policy professionals, and people with lived experience of tuberculosis (TB) to shape our next TB Action Plan. Together we can improve how we prevent, detect, and control TB. 🛡️
🗓️ Deadline: 2 May
🔗 www.gov.uk/government/n...
🗓️ Deadline: 2 May
🔗 www.gov.uk/government/n...
Reposted by Roxana Zamudio
We are embarking on a mission to #KeepAntibioticsWorking. Our antibiotics are under threat from antimicrobial resistance and we all need to work together to save them for future generations.
Join us on 7 April - click the link or scan the code to learn more public.govdelivery.com/accounts/UKH...
Join us on 7 April - click the link or scan the code to learn more public.govdelivery.com/accounts/UKH...
April 1, 2025 at 4:23 PM
We are embarking on a mission to #KeepAntibioticsWorking. Our antibiotics are under threat from antimicrobial resistance and we all need to work together to save them for future generations.
Join us on 7 April - click the link or scan the code to learn more public.govdelivery.com/accounts/UKH...
Join us on 7 April - click the link or scan the code to learn more public.govdelivery.com/accounts/UKH...
Thrilled to share this recent study👇, which reveals the contribution of #transposons in mediating the transmission of #blaOXA-23 within specific #lineages of P. mirabilis and E. coli isolates from the UK. Big thanks to all co-authors & collaborators!
Dissemination of OXA-23 carbapenemase-producing Proteus mirabilis and Escherichia coli is driven by transposon-carrying lineages in the UK https://www.medrxiv.org/content/10.1101/2025.03.14.25323970v1
March 21, 2025 at 10:39 AM
Thrilled to share this recent study👇, which reveals the contribution of #transposons in mediating the transmission of #blaOXA-23 within specific #lineages of P. mirabilis and E. coli isolates from the UK. Big thanks to all co-authors & collaborators!
Reposted by Roxana Zamudio
What’s on our foods? @gabastorga.bsky.social from the lab of @alisonmather.bsky.social explains how to discover E. coli diversity using WGS, presented at #cminorwich25
February 26, 2025 at 3:54 PM
What’s on our foods? @gabastorga.bsky.social from the lab of @alisonmather.bsky.social explains how to discover E. coli diversity using WGS, presented at #cminorwich25
Reposted by Roxana Zamudio
Join me at the Ellison Institute of Technology, Oxford! If u want to solve infectious diseases through the use of data, science, and technology, this is your opportunity. apply.workable.com/ellison-inst...
PS: Great opportunity for peeps with Academic experience to make the switch towards industry
PS: Great opportunity for peeps with Academic experience to make the switch towards industry
Senior Bioinformatician - Ellison Institute of Technology
The Ellison Institute of Technology (EIT) Oxford tackles humanity’s greatest challenges by turning science and technology into impactful global solutions. Focused on areas like health, food security, ...
apply.workable.com
February 14, 2025 at 2:24 AM
Join me at the Ellison Institute of Technology, Oxford! If u want to solve infectious diseases through the use of data, science, and technology, this is your opportunity. apply.workable.com/ellison-inst...
PS: Great opportunity for peeps with Academic experience to make the switch towards industry
PS: Great opportunity for peeps with Academic experience to make the switch towards industry
Reposted by Roxana Zamudio
Interested in bioinformatics and STIs? Great job below please apply!
www.civilservicejobs.service.gov.uk/csr/jobs.cgi...
www.civilservicejobs.service.gov.uk/csr/jobs.cgi...
Bioinformatics Lead - Civil Service Jobs - GOV.UKGOV.UK
Search and apply for jobs in the UK Civil Service
www.civilservicejobs.service.gov.uk
February 12, 2025 at 9:12 AM
Interested in bioinformatics and STIs? Great job below please apply!
www.civilservicejobs.service.gov.uk/csr/jobs.cgi...
www.civilservicejobs.service.gov.uk/csr/jobs.cgi...