Ritu
@rkundu.bsky.social
Kindness. Discipline.. Perseverance…
Bioinformatics Scientist 👩🏻💻
Asato mā sadgamaya. tamasomā jyotir gamaya.. mrityormāamritam gamaya…
Bioinformatics Scientist 👩🏻💻
Asato mā sadgamaya. tamasomā jyotir gamaya.. mrityormāamritam gamaya…
Reposted by Ritu
Our hitchhiking paper is out at genomebiology.biomedcentral.com/articles/10.... great collaborative effort with Prasad Sarashetti, @jlipovac.bsky.social, Filip Tomas and JJ Liu.
Briefly, the nanopore is enough for high-quality human genomes. Recently, HERRO showed that even UL is sufficient. 1/3
Briefly, the nanopore is enough for high-quality human genomes. Recently, HERRO showed that even UL is sufficient. 1/3
Evaluating data requirements for high-quality haplotype-resolved genomes for creating robust pangenome references - Genome Biology
Background Long-read technologies from Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) have transformed genomics research by providing diverse data types like HiFi, Duplex, and ult...
genomebiology.biomedcentral.com
December 19, 2024 at 7:13 AM
Our hitchhiking paper is out at genomebiology.biomedcentral.com/articles/10.... great collaborative effort with Prasad Sarashetti, @jlipovac.bsky.social, Filip Tomas and JJ Liu.
Briefly, the nanopore is enough for high-quality human genomes. Recently, HERRO showed that even UL is sufficient. 1/3
Briefly, the nanopore is enough for high-quality human genomes. Recently, HERRO showed that even UL is sufficient. 1/3
A great opportunity if the idea of paving new roads in an uncharted territory of bioinfo algorithms excites you. Getting to work with and learn from brilliant and kind colleagues is what I have found to be an added bonus of working in this team.
The Genome Informatics team is hiring! We are a smart, fun, and creative team that is working on the cutting edge of bioinformatics, including Constellation read mapping, an exciting new technology from Illumina enabling long range information from short reads. Also, Vitor is an awesome manager :-)
Senior Bioinformatics Scientist
What if the work you did every day could impact the lives of people you know? Or all of humanity? At Illumina, we are expanding access to genomic technology to realize health equity for billions of pe...
illumina.wd1.myworkdayjobs.com
November 23, 2024 at 6:42 PM
A great opportunity if the idea of paving new roads in an uncharted territory of bioinfo algorithms excites you. Getting to work with and learn from brilliant and kind colleagues is what I have found to be an added bonus of working in this team.
Reposted by Ritu
Theoretical/datastructure papers should have summarizing figures! One, because visuals (at least for me) help explaining and understanding, and two, because it's much quicker to refer back to and 're-understand' a figure than to search the text for what you need.
November 20, 2024 at 12:26 PM
Theoretical/datastructure papers should have summarizing figures! One, because visuals (at least for me) help explaining and understanding, and two, because it's much quicker to refer back to and 're-understand' a figure than to search the text for what you need.
+1
I am incredibly proud of the work being done by the bioinformatics and assay team to enable Constellation mapped read technology. I feel very fortunate to work with such bright and talented people :-)
Illumina Provides Updates on Multiomics Product Pipeline at ASHG
The company offered more details on its "constellation" mapped read technology, Illumina Protein Prep assay, 5-base genome, PIPseq V single-cell assay, and paired 500-base MiSeq reads.
www.genomeweb.com
November 18, 2024 at 8:04 PM
+1
Or CHM13.
who knew it would be easier to get everyone to switch social media platforms than getting them to use hg38
November 16, 2024 at 11:41 AM
Or CHM13.
Reposted by Ritu
November 15, 2024 at 2:04 PM
Are there any software, programming, Rust, C++, related starter packs already available?
November 15, 2024 at 1:11 PM
Are there any software, programming, Rust, C++, related starter packs already available?
Reposted by Ritu
A thread with some new starter packs in genomics and bioinformatics 🧵 1/13...
November 15, 2024 at 9:56 AM
A thread with some new starter packs in genomics and bioinformatics 🧵 1/13...
Reposted by Ritu
I made a starter pack for algorithmic genomics. It's certainly incomplete, but already has a ton of awesome peeps. Let me know if you know people I should add (with a focus on algorithms and data structures in genomics)
go.bsky.app/TRWCnZs
go.bsky.app/TRWCnZs
November 12, 2024 at 2:03 PM
I made a starter pack for algorithmic genomics. It's certainly incomplete, but already has a ton of awesome peeps. Let me know if you know people I should add (with a focus on algorithms and data structures in genomics)
go.bsky.app/TRWCnZs
go.bsky.app/TRWCnZs
Yay! My post-doctoral work is finally turned into an article in Nature Methods. Interested in polishing long reads assemblies using Illumina short reads and scaffolding using long or hic reads? You might find some interesting tricks in Hypo here: www.nature.com/articles/s41...
Constructing telomere-to-telomere diploid genome by polishing haploid nanopore-based assembly - Nature Methods
This work introduces two polishers for refining the draft genome generated from nanopore long reads, as well as an assembler pipeline for producing telomere-to-telomere diploid genome with low error r...
www.nature.com
March 13, 2024 at 8:36 PM
Yay! My post-doctoral work is finally turned into an article in Nature Methods. Interested in polishing long reads assemblies using Illumina short reads and scaffolding using long or hic reads? You might find some interesting tricks in Hypo here: www.nature.com/articles/s41...