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philouail.bsky.social
Phili
@philouail.bsky.social
56 followers 140 following 6 posts
A happy (and a bit stressed) PhD student, doing her best to navigate software development in R and having fun doing it.
Wanna learn LC-MS/MS analysis in R ? Click https://github.com/rformassspectrometry/Metabonaut
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Reposted by Phili
jorainer.bsky.social
@philouail.bsky.social presenting the #Metabonaut tutorials for #metabolomics data analysis at #EuroBioC2025 @bioconductor.bsky.social conference.

@human-dn.bsky.social #MassSpectrometry #ProudPI
September 17, 2025 at 9:24 AM
Reposted by Phili
jorainer.bsky.social
Philippine @philouail.bsky.social presenting #xcms , summary of 20 years development and recent extensions at the #MetSoc2025 conference!

#ProudPI 😎 #rstats @bioconductor.bsky.social #metabolomics #MassSpectrometry
June 26, 2025 at 9:10 AM
Reposted by Phili
me-datapoint.bsky.social
@jorainer.bsky.social and @philouail.bsky.social gave a great overview of the ecosystem around #RforMassSpectrometry and #XCMS!

#MetSoc25
I am super glad they now also provide options to combine with #Python and #matchms (thanks🙏)
June 26, 2025 at 9:32 AM
philouail.bsky.social
🚀 New in Metabonaut: tested xcms on a 4,000+ sample LC-MS dataset — all on a laptop! 💻
Fully reproducible + now possible thanks to dev improvements in xcms.
Vignette: rformassspectrometry.github.io/Metabonaut/a...

Big thanks to @jorainer.bsky.social

#RStats #MassSpec #OpenScience #Metabonaut
Large Scale Data Preprocessing with xcms
rformassspectrometry.github.io
June 4, 2025 at 11:14 AM
Reposted by Phili
jorainer.bsky.social
Work from @philouail.bsky.social with contributions from William Kumler, Pablo Vangeenderhuysen and Carl Brunius! Thanks! 🥳
April 18, 2025 at 7:02 AM
Reposted by Phili
jorainer.bsky.social
And big thanks also to the @eubic-ms.org hackathon team contributing to our #SpectriPy package github.com/RforMassSpec... !

Next on the list submission of the package to 👉 @bioconductor.bsky.social
April 11, 2025 at 10:56 AM
Reposted by Phili
jameslmilner.bsky.social
One thing maybe not discussed enough is the long term opportunity cost of not investing and supporting open source software. Imagine the more and better Blenders, GIMPs, Firefoxs, InkScapes, QGISs etc we would of had (+ could have) if open source was taken more seriously by government and businesses
February 23, 2025 at 8:19 PM
Reposted by Phili
marinetondelier.fr
Je ne ferai pas de starter pack.

Ni de dessins copiant Ghibli sans l'autorisation de Miyazaki.

Ces images générées par IA sont irrespectueuses pour des artistes déjà précaires.

Et c'est un gouffre énergétique insensé.

Je préfère qu'il reste de l'eau et de l'art à nos enfants.
April 11, 2025 at 6:25 AM
philouail.bsky.social
Combine R + Python seamlessly for LC-MS/MS annotation using #SpectriPy 🧬
Fully reproducible with public #MetaboLights data
🔗 rformassspectrometry.github.io/Metabonaut/a...
#RStats #MassSpec
LC-MS/MS Data Annotation using R and Python
rformassspectrometry.github.io
April 11, 2025 at 10:13 AM
philouail.bsky.social
🚀 Starting the week by sharing Metabonaut:

rformassspectrometry.github.io/Metabonaut/

A collection of comprehensive tutorials for LC-MS/MS data analysis in R! Learn raw data processing, annotation & stats with xcms, RforMassSpectrometry & Bioconductor—all reproducible & community-driven! #rstats
Exploring and Analyzing LC-MS Data
This resource hosts tutorials and end-to-end workflows describing how to analyze LC-MS/MS data, from raw files to annotation, using Bioconductor packages.
rformassspectrometry.github.io
March 31, 2025 at 6:51 AM