Philip Hubbard
@philiphubbard.bsky.social
I used Cycles, with some custom Python to simplify setup common to videos of neuroscience and cell biology: github.com/connectome-n...
In the past I used the OTOY Octane renderer with Blender. But it has a commercial license, and these days I think Cycles produces good results with less effort.
In the past I used the OTOY Octane renderer with Blender. But it has a commercial license, and these days I think Cycles produces good results with less effort.
October 6, 2025 at 9:51 PM
I used Cycles, with some custom Python to simplify setup common to videos of neuroscience and cell biology: github.com/connectome-n...
In the past I used the OTOY Octane renderer with Blender. But it has a commercial license, and these days I think Cycles produces good results with less effort.
In the past I used the OTOY Octane renderer with Blender. But it has a commercial license, and these days I think Cycles produces good results with less effort.
Larissa Heinrich's diffusion model:
github.com/saalfeldlab/...
Visualized with Gephi. I shrank each layer for visualization, yet there are 1.8 million nodes and 109 million edges, so layout with Gephi ForceAtlas2 takes some time.
gephi.org
Inspired by Matt Fyles:
www.hpcwire.com/2017/02/15/h...
github.com/saalfeldlab/...
Visualized with Gephi. I shrank each layer for visualization, yet there are 1.8 million nodes and 109 million edges, so layout with Gephi ForceAtlas2 takes some time.
gephi.org
Inspired by Matt Fyles:
www.hpcwire.com/2017/02/15/h...
September 16, 2025 at 4:56 PM
Larissa Heinrich's diffusion model:
github.com/saalfeldlab/...
Visualized with Gephi. I shrank each layer for visualization, yet there are 1.8 million nodes and 109 million edges, so layout with Gephi ForceAtlas2 takes some time.
gephi.org
Inspired by Matt Fyles:
www.hpcwire.com/2017/02/15/h...
github.com/saalfeldlab/...
Visualized with Gephi. I shrank each layer for visualization, yet there are 1.8 million nodes and 109 million edges, so layout with Gephi ForceAtlas2 takes some time.
gephi.org
Inspired by Matt Fyles:
www.hpcwire.com/2017/02/15/h...
“The Menagerie” series by Tui Sutherland: tuibooks.com/book/the-men...
The Menagerie - Tui T. Sutherland
From the New York Times bestselling author of the Wings of Fire series, Tui T. Sutherland, and her sister, Kari Sutherland, comes the Menagerie series, perfect for fans of Brandon Mull’s Fablehaven se...
tuibooks.com
August 18, 2025 at 12:21 AM
“The Menagerie” series by Tui Sutherland: tuibooks.com/book/the-men...
Larissa's U-net:
open.quiltdata.com/b/janelia-co...
Layer sizes reduced for visualization.
Layout with Gephi, using ForceAtlas2:
gephi.org
Inspired by Matt Fyles:
www.hpcwire.com/2017/02/15/h...
Thanks to Roman Vaxenburg, Konrad Rokicki, @preibischs.bsky.social, @herrsaalfeld.bsky.social
open.quiltdata.com/b/janelia-co...
Layer sizes reduced for visualization.
Layout with Gephi, using ForceAtlas2:
gephi.org
Inspired by Matt Fyles:
www.hpcwire.com/2017/02/15/h...
Thanks to Roman Vaxenburg, Konrad Rokicki, @preibischs.bsky.social, @herrsaalfeld.bsky.social
July 23, 2025 at 9:23 AM
Larissa's U-net:
open.quiltdata.com/b/janelia-co...
Layer sizes reduced for visualization.
Layout with Gephi, using ForceAtlas2:
gephi.org
Inspired by Matt Fyles:
www.hpcwire.com/2017/02/15/h...
Thanks to Roman Vaxenburg, Konrad Rokicki, @preibischs.bsky.social, @herrsaalfeld.bsky.social
open.quiltdata.com/b/janelia-co...
Layer sizes reduced for visualization.
Layout with Gephi, using ForceAtlas2:
gephi.org
Inspired by Matt Fyles:
www.hpcwire.com/2017/02/15/h...
Thanks to Roman Vaxenburg, Konrad Rokicki, @preibischs.bsky.social, @herrsaalfeld.bsky.social
A final found image, with blue LPsP neurons that input to the grey PFL1s.
June 18, 2025 at 10:48 PM
A final found image, with blue LPsP neurons that input to the grey PFL1s.
Here's another image I found, showing Delta7 neurons in gold providing more inputs to PFL1 neurons in grey. I like that the transparency makes the PFL1s look almost like glass.
June 18, 2025 at 10:48 PM
Here's another image I found, showing Delta7 neurons in gold providing more inputs to PFL1 neurons in grey. I like that the transparency makes the PFL1s look almost like glass.
May 29, 2025 at 10:36 PM