Pau Badia i Mompel
@paubadiam.bsky.social
Postdoctoral researcher at @anshulkundaje.bsky.social Machine learning #ML, gene regulatory networks #GRN, single cell and spatial #omics.
Previously at @saezlab.bsky.social
Core developer of https://decoupler.readthedocs.io/ at @scverse.bsky.social
Previously at @saezlab.bsky.social
Core developer of https://decoupler.readthedocs.io/ at @scverse.bsky.social
scverse conference 2025 done ✅ Really engaging week at Stanford with scPerturb-seq work, agentic models in biology, and strong interest in scaling software to millions of cells. Organizing alongside the rest of the @scverse.bsky.social team was a blast! Hope attendees found it productive 😄
November 21, 2025 at 5:37 PM
scverse conference 2025 done ✅ Really engaging week at Stanford with scPerturb-seq work, agentic models in biology, and strong interest in scaling software to millions of cells. Organizing alongside the rest of the @scverse.bsky.social team was a blast! Hope attendees found it productive 😄
The Waddington's landscape lamp does not exist. The Waddington's landscape lamp:
April 8, 2025 at 3:42 PM
The Waddington's landscape lamp does not exist. The Waddington's landscape lamp:
🎙️Today, I had the honor of presenting our work on #GRN evaluation for precision medicine at the beautiful Casa de la Convalescència during the #IRBBarcelona #AI in drug discovery & biomedicine conference. An incredible venue and an inspiring lineup of speakers! 😉
March 31, 2025 at 2:20 PM
🎙️Today, I had the honor of presenting our work on #GRN evaluation for precision medicine at the beautiful Casa de la Convalescència during the #IRBBarcelona #AI in drug discovery & biomedicine conference. An incredible venue and an inspiring lineup of speakers! 😉
Proud to have defended my PhD dissertation yesterday! 🥳 Huge thanks to @juliosaezrod.bsky.social for always believing in me, to @saezlab.bsky.social and all the friends who supported me, and to @celialm.bsky.social for being my rock all these years ☺️ We’ll miss Heidelberg 🥲
February 11, 2025 at 10:39 AM
Proud to have defended my PhD dissertation yesterday! 🥳 Huge thanks to @juliosaezrod.bsky.social for always believing in me, to @saezlab.bsky.social and all the friends who supported me, and to @celialm.bsky.social for being my rock all these years ☺️ We’ll miss Heidelberg 🥲
Thesis deposited, finally! 🥳 It’s been a long but fascinating journey 😄 The defense is on 10th February and open if you'd like to attend. Stay tuned in the coming weeks for a preprint with some intriguing insights about multimodal gene regulatory networks (GRNs) #GRN
November 25, 2024 at 1:47 PM
Thesis deposited, finally! 🥳 It’s been a long but fascinating journey 😄 The defense is on 10th February and open if you'd like to attend. Stay tuned in the coming weeks for a preprint with some intriguing insights about multimodal gene regulatory networks (GRNs) #GRN
POV: you try to run any multimodal GRN inference method 🫠
November 14, 2024 at 4:06 PM
POV: you try to run any multimodal GRN inference method 🫠
📚 Our new literature-derived GRN is out today in NAR. Compared to our previous DoRothEA, it contains higher coverage of TFs and TF-Gene interactions extracted from publications. Now also available in decoupler decoupler-py.readthedocs.io/en/latest/
Link 👉 doi.org/10.1093/nar/...
Link 👉 doi.org/10.1093/nar/...
October 19, 2023 at 9:03 AM
📚 Our new literature-derived GRN is out today in NAR. Compared to our previous DoRothEA, it contains higher coverage of TFs and TF-Gene interactions extracted from publications. Now also available in decoupler decoupler-py.readthedocs.io/en/latest/
Link 👉 doi.org/10.1093/nar/...
Link 👉 doi.org/10.1093/nar/...
Very happy to see that our review on gene regulatory networks is being featured by Nature Reviews Genetics and that it inspired its cover! 🥳
doi.org/10.1038/s415...
doi.org/10.1038/s415...
October 16, 2023 at 9:36 AM
Very happy to see that our review on gene regulatory networks is being featured by Nature Reviews Genetics and that it inspired its cover! 🥳
doi.org/10.1038/s415...
doi.org/10.1038/s415...
Happy to announce that decoupler just hit 100 GitHub stars 🌟 in both R and Python repos! 📦🐍 It allows to explore your omics data with different enrichment methods and databases 🧬🔍
Python: decoupler-py.readthedocs.io/en/latest/
R: saezlab.github.io/decoupleR/
Python: decoupler-py.readthedocs.io/en/latest/
R: saezlab.github.io/decoupleR/
October 10, 2023 at 1:39 PM
Happy to announce that decoupler just hit 100 GitHub stars 🌟 in both R and Python repos! 📦🐍 It allows to explore your omics data with different enrichment methods and databases 🧬🔍
Python: decoupler-py.readthedocs.io/en/latest/
R: saezlab.github.io/decoupleR/
Python: decoupler-py.readthedocs.io/en/latest/
R: saezlab.github.io/decoupleR/