Oguz Kanca
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okanca.bsky.social
Oguz Kanca
@okanca.bsky.social
Assistant professor at Baylor College of Medicine, Drosophila enthusiast, tackling the conserved genome one gene at a time
Thank you very much for the kind words, Tim. Just a small correction, it was the GDP and DRSC that got the award.
March 20, 2025 at 7:27 PM
The project was done by a talented postdoc in our lab Ali Bereshneh. The paper can be reached following the link below:
authors.elsevier.com/a/1km46geXDylR
authors.elsevier.com
March 15, 2025 at 12:29 AM
We are grateful to families and individuals who participated in the study and our clinical collaborators for an excellent collaboration. We are also grateful for our fly collaborators Jonathan Andrews and Daniel Eberl.
March 15, 2025 at 12:27 AM
We noticed that when we co-express the variant CDKL1 or 2 together with reference CDKL5 in Cdkl mutant background,(or CDKL1 or 2) the rescue ability of reference genes was impaired. This indicates that the variants we identified act in a dominant negative manner.
March 15, 2025 at 12:24 AM
All the individuals in our cohort are de novo heterozygous individuals, suggesting the variants we tested were unlikely to be loss of function alleles. We tested whether variants in CDKL1 or 2 can impinge on the function of reference CDKL genes.
March 15, 2025 at 12:23 AM
Variants in CDKL1 and CDKL2 either failed to rescue the observed phenotypes or rescued partially. CDKL genes with the exception of CDKL5 are tolerant to variation, with many individuals in control populations with one copy loss of CDKL1 or 2.
March 15, 2025 at 12:20 AM
We broaden our search to paralogs of CDKL2 to find variants that may be associated with Mendelian Diseases. We identified two variants in CDKL1 presenting with developmental delay in publicly available Deciphering Developmental Delay and GeneDx consortia that we included in our analysis.
March 15, 2025 at 12:17 AM
Interestingly, loss of Cdkl caused semi lethality, heat induced seizures and climbing defects. These phenotypes could be rescued by expressing the reference UAS human cDNAs of CDKL1, CDKL2, CDKL4 and CDKL5.
March 15, 2025 at 12:15 AM
To our surprise, Cdkl was very sparsely expressed in the central nervous system but we noticed Cdkl expression in every sensory neuron we analyzed (with the exception of photoreceptors). Below is our contribution to fluorescent Friday
March 15, 2025 at 12:13 AM
We generated a versatile allele of Cdkl, Cdkll-T2AGAL4 that allow us to determine the expression pattern of the gene and loss of function phenotypes associated with the loss of the gene. More details about the methodology and similar alleles can be found in flypush.research.bcm.edu/pscreen/crim...
GDP Screen Database
The Drosophila Gene Disruption Project (GDP) aims to obtain a transposable element insertion in each gene and is a collaboration among the Bellen, Perrimon and Spradling labs.
flypush.research.bcm.edu
March 15, 2025 at 12:10 AM
We used fruit fly model to study the impact of the identified variants. Drosophila has a single gene CG7236 (that we propose to rename Cdkl) which is orthologous to all 5 CDKL family of genes.
March 15, 2025 at 12:08 AM
Through gene matching efforts we connected with other clinical collaborators from Harvard Medical School and Belfast City Hospital who identified individuals with CDKL2 variants presenting with neuorodevelopmental symptoms partially overlapping with CDD symptoms.
March 15, 2025 at 12:04 AM
Variants in CDKL5 cause CDKL5 Deficiency Disorder (CDD), which is a rare disease with severe symptoms. Individuals with CDKL5 Deficiency disorder typically show symptoms including early onset epilepsy and developmental delay.
March 15, 2025 at 12:02 AM
It all started with our clinical collaborators from the Undiagnosed Diseases Network who identified an individual with a de novo variant in CDKL2 gene. CDKL2 is a member of Cyclin Dependent Kinase Like gene family. The only CDKL family member associated with a Mendelian disease was CDKL5.
March 14, 2025 at 11:58 PM
Admittedly, flies are not as boopworthy but it reminded me of our cover from 2014.
November 20, 2024 at 5:50 PM
Thank you Filip. And thanks for making the starter pack.
November 20, 2024 at 2:09 PM
Could you please add me too?
November 20, 2024 at 5:22 AM
I think when you swipe left you go from discovery mode to following mode where you only see the posts from those you follow. Does that help?
November 13, 2024 at 12:40 PM
I’d love to be added if possible. Thank you for the starter list
November 13, 2024 at 10:38 AM