Martina Summer-Kutmon
@mkutmon.bsky.social
Mom, wife, researcher, assistant prof @macsbio, bioinformatician, network biologist, data analysis and visualization, STEM, women in STEM, WiDS
✨Perfect #MaCSBio day out at Alkenrode with my amazing colleagues! These moments are what make us stronger together as a team.🌞 #TeamBuilding #SystemsBiology #Bioinformatics
Amazing day out with our #MaCSBio team at Alkenrode! 🌞
Workshops (🎶, 🤺, and 🎨), a guided hike through Limburgian hills, pub quiz, and incredible BBQ 😋. Perfect break from research and education - good food, great colleagues, and beautiful surroundings!
#TeamBuilding #SystemsBiology #Bioinformatics
Workshops (🎶, 🤺, and 🎨), a guided hike through Limburgian hills, pub quiz, and incredible BBQ 😋. Perfect break from research and education - good food, great colleagues, and beautiful surroundings!
#TeamBuilding #SystemsBiology #Bioinformatics
August 27, 2025 at 11:46 AM
✨Perfect #MaCSBio day out at Alkenrode with my amazing colleagues! These moments are what make us stronger together as a team.🌞 #TeamBuilding #SystemsBiology #Bioinformatics
✈️💻🧬 Heading home after an inspiring #ISMBECCB2025! Grateful for the amazing talks, great discussions, and fun activities. So nice reconnecting with old friends and meeting new ones 🥰
I'm proud of the #NetBio COSI team I get to work with - you're awesome!
@netbio.bsky.social @iscbio.bsky.social
I'm proud of the #NetBio COSI team I get to work with - you're awesome!
@netbio.bsky.social @iscbio.bsky.social
July 25, 2025 at 5:30 AM
✈️💻🧬 Heading home after an inspiring #ISMBECCB2025! Grateful for the amazing talks, great discussions, and fun activities. So nice reconnecting with old friends and meeting new ones 🥰
I'm proud of the #NetBio COSI team I get to work with - you're awesome!
@netbio.bsky.social @iscbio.bsky.social
I'm proud of the #NetBio COSI team I get to work with - you're awesome!
@netbio.bsky.social @iscbio.bsky.social
Reposted by Martina Summer-Kutmon
⏳ The countdown is on! #NetBio at #ISMBECCB2025 kicks off in just 5 minutes!
The organizing team is thrilled to welcome you and share the exciting program. See you there!
The organizing team is thrilled to welcome you and share the exciting program. See you there!
July 22, 2025 at 10:15 AM
⏳ The countdown is on! #NetBio at #ISMBECCB2025 kicks off in just 5 minutes!
The organizing team is thrilled to welcome you and share the exciting program. See you there!
The organizing team is thrilled to welcome you and share the exciting program. See you there!
Reposted by Martina Summer-Kutmon
📢 Next up: @SaniyaKhullar presents NetREm, a powerful new method revealing how transcription factors coordinate gene regulation across cell types.
From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation.
#ISMBECCB2025 #NetworkBiology
From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation.
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 11:28 AM
📢 Next up: @SaniyaKhullar presents NetREm, a powerful new method revealing how transcription factors coordinate gene regulation across cell types.
From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation.
#ISMBECCB2025 #NetworkBiology
From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation.
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
🧬Excited to welcome Giulia Cesaro to present #CellGOSSIP, a novel strategy to decode cell-specific intracellular signaling from noisy single-cell data using personalized network propagation.
🎯 Reveal hidden pathway dynamics and functional cell states!
#ISMBECCB2025 #NetworkBiology #NetBio
🎯 Reveal hidden pathway dynamics and functional cell states!
#ISMBECCB2025 #NetworkBiology #NetBio
July 22, 2025 at 11:50 AM
🧬Excited to welcome Giulia Cesaro to present #CellGOSSIP, a novel strategy to decode cell-specific intracellular signaling from noisy single-cell data using personalized network propagation.
🎯 Reveal hidden pathway dynamics and functional cell states!
#ISMBECCB2025 #NetworkBiology #NetBio
🎯 Reveal hidden pathway dynamics and functional cell states!
#ISMBECCB2025 #NetworkBiology #NetBio
Love the new logo and how it highlights that this community aims to connect network and graph-based tools/resources, algorithms/methods and their biomedical applications 🤩!
#NetworkBiology
#NetworkBiology
Our #NetBio track will continue in a few minutes in room 1B with another set of great talks!
Have you already seen our new logo ✨👏? Thanks @romanayanez.bsky.social for the beautiful design 🥰!
Have you already seen our new logo ✨👏? Thanks @romanayanez.bsky.social for the beautiful design 🥰!
July 24, 2025 at 9:17 PM
Love the new logo and how it highlights that this community aims to connect network and graph-based tools/resources, algorithms/methods and their biomedical applications 🤩!
#NetworkBiology
#NetworkBiology
Reposted by Martina Summer-Kutmon
🔊 Up next at #NetBio: Sindhura Kommu presents her work on "Prediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning."
She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨!
#ISMBECCB2025 #NetworkBiology
She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨!
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 1:10 PM
🔊 Up next at #NetBio: Sindhura Kommu presents her work on "Prediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning."
She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨!
#ISMBECCB2025 #NetworkBiology
She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨!
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
🔊 Now presenting in our #NetBio track: Ibrahim Alsaggaf introduces Sup-EGsCL, a contrastive learning method using enhanced Gaussian noise augmentation to better predict gene longevity effects from protein-protein interaction networks.
github.com/ibrahimsagga...
#ISMBECCB2025 #NetworkBiology
github.com/ibrahimsagga...
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 1:31 PM
🔊 Now presenting in our #NetBio track: Ibrahim Alsaggaf introduces Sup-EGsCL, a contrastive learning method using enhanced Gaussian noise augmentation to better predict gene longevity effects from protein-protein interaction networks.
github.com/ibrahimsagga...
#ISMBECCB2025 #NetworkBiology
github.com/ibrahimsagga...
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
🎙️Next #NetBio talk: Kivilcim Ozturk uncovers how mutations in intrinsically disordered regions (IDRs) disrupt protein interactions in cancer, revealing potential cellular vulnerabilities.
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 1:47 PM
🎙️Next #NetBio talk: Kivilcim Ozturk uncovers how mutations in intrinsically disordered regions (IDRs) disrupt protein interactions in cancer, revealing potential cellular vulnerabilities.
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
🎤 Next #NetBio talk:
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 2:06 PM
🎤 Next #NetBio talk:
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
🔊 Next in #NetBio at #ISMBECCB2025
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
July 22, 2025 at 2:27 PM
🔊 Next in #NetBio at #ISMBECCB2025
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
Reposted by Martina Summer-Kutmon
☕️ The #NetBio COSI team will be around during the 4PM coffee break in Room 1B!
Come chat about the COSI, getting involved, or anything else. We’ve got open roles (incl. one Abstract Chair position) for next year. Let’s connect if you are interested! #ISMBECCB2025
Come chat about the COSI, getting involved, or anything else. We’ve got open roles (incl. one Abstract Chair position) for next year. Let’s connect if you are interested! #ISMBECCB2025
July 22, 2025 at 2:36 PM
☕️ The #NetBio COSI team will be around during the 4PM coffee break in Room 1B!
Come chat about the COSI, getting involved, or anything else. We’ve got open roles (incl. one Abstract Chair position) for next year. Let’s connect if you are interested! #ISMBECCB2025
Come chat about the COSI, getting involved, or anything else. We’ve got open roles (incl. one Abstract Chair position) for next year. Let’s connect if you are interested! #ISMBECCB2025
Reposted by Martina Summer-Kutmon
🎤 Next talk at #NetBio:
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 2:49 PM
🎤 Next talk at #NetBio:
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
After lots of #NetBio discussions over coffee, we are now starting the last session for today:
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
July 22, 2025 at 3:45 PM
After lots of #NetBio discussions over coffee, we are now starting the last session for today:
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
Reposted by Martina Summer-Kutmon
🎤 Next talk at #NetBio is by Aritra Bose from IBM Research presenting their work on "Quantum Random Walks for Biomarker Discovery in Biomolecular Networks".
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 4:05 PM
🎤 Next talk at #NetBio is by Aritra Bose from IBM Research presenting their work on "Quantum Random Walks for Biomarker Discovery in Biomolecular Networks".
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
⌛It's already time for our last #NetBio speaker of today:
✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨
#ISMBECCB2025 #NetworkBiology
✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 4:29 PM
⌛It's already time for our last #NetBio speaker of today:
✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨
#ISMBECCB2025 #NetworkBiology
✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
✨After a very well-attended first poster session with lots of discussions, we are now starting with the second day of #NetBio at #ISMBECCB2025!
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
July 23, 2025 at 10:30 AM
✨After a very well-attended first poster session with lots of discussions, we are now starting with the second day of #NetBio at #ISMBECCB2025!
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
Reposted by Martina Summer-Kutmon
#NetBio talks are continuing in room 1B:
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 10:33 AM
#NetBio talks are continuing in room 1B:
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
🔊 Nicoleta Siminea just presented her work on "Interactome-based computational solutions to support personalized drug therapy decisions in glioblastoma" at the #NetBio track at #ISMBECCB2025!
July 23, 2025 at 11:01 AM
🔊 Nicoleta Siminea just presented her work on "Interactome-based computational solutions to support personalized drug therapy decisions in glioblastoma" at the #NetBio track at #ISMBECCB2025!
Reposted by Martina Summer-Kutmon
🎤 Next up is Terence Egbelo
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
July 23, 2025 at 11:06 AM
🎤 Next up is Terence Egbelo
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
Reposted by Martina Summer-Kutmon
✨Johannes Kersting just presented his cool #Nextflow Pipeline for Network-Based Disease Module Identification and Drug Repurposing
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
July 23, 2025 at 11:38 AM
✨Johannes Kersting just presented his cool #Nextflow Pipeline for Network-Based Disease Module Identification and Drug Repurposing
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
Reposted by Martina Summer-Kutmon
📣Last speaker of the #NetBio morning session:
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 11:51 AM
📣Last speaker of the #NetBio morning session:
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
✨ And it's already time for the last selected #NetBio talk! Piotr Sliwa is presenting "Multilayer Networks Identify Clinically Relevant Patient Endotypes in COVID-19 and Sepsis"
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 1:10 PM
✨ And it's already time for the last selected #NetBio talk! Piotr Sliwa is presenting "Multilayer Networks Identify Clinically Relevant Patient Endotypes in COVID-19 and Sepsis"
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
Reposted by Martina Summer-Kutmon
👋 We wrap up our #NetBio track 2025 with announcing the #Cytoscape network visualization competition winners (woobox.com/b9poce)
Congrats:
1: Alejandra Paulina Perez Gonzalez
2. Michael Costanzo
3. Jong Chan Lim
👏👏👏 Exciting to have Alejandra and Jong in the audience and congrats to Michael!
Congrats:
1: Alejandra Paulina Perez Gonzalez
2. Michael Costanzo
3. Jong Chan Lim
👏👏👏 Exciting to have Alejandra and Jong in the audience and congrats to Michael!
NetBio Cytoscape Visualization Competition
woobox.com
July 23, 2025 at 1:33 PM
👋 We wrap up our #NetBio track 2025 with announcing the #Cytoscape network visualization competition winners (woobox.com/b9poce)
Congrats:
1: Alejandra Paulina Perez Gonzalez
2. Michael Costanzo
3. Jong Chan Lim
👏👏👏 Exciting to have Alejandra and Jong in the audience and congrats to Michael!
Congrats:
1: Alejandra Paulina Perez Gonzalez
2. Michael Costanzo
3. Jong Chan Lim
👏👏👏 Exciting to have Alejandra and Jong in the audience and congrats to Michael!
Reposted by Martina Summer-Kutmon
🎉 And now it is time to introduce our last and shared keynote with the Microbiome COSI:
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
July 23, 2025 at 1:51 PM
🎉 And now it is time to introduce our last and shared keynote with the Microbiome COSI:
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025