NetBio COSI
@netbio.bsky.social
ISCB's Network Biology Community of Special Interest
๐ @beatrizurda.bsky.social - in the hurry of putting the award ceremony together, it seems our best talk prize for lost but you'll definitely receive the award from us anyway ๐๐
July 24, 2025 at 5:11 PM
๐ @beatrizurda.bsky.social - in the hurry of putting the award ceremony together, it seems our best talk prize for lost but you'll definitely receive the award from us anyway ๐๐
๐๐ Congrats to our #NetBio2025 prize winners:
- Best Talk: Beatriz Urda-Garcรญa
- Best Poster Method: Arne Wehling
- Best Poster Application: Sebastian Urquiza-Zurich
- Best Poster Tool: Estefania Torrejon
Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!
- Best Talk: Beatriz Urda-Garcรญa
- Best Poster Method: Arne Wehling
- Best Poster Application: Sebastian Urquiza-Zurich
- Best Poster Tool: Estefania Torrejon
Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!
July 24, 2025 at 5:03 PM
๐๐ Congrats to our #NetBio2025 prize winners:
- Best Talk: Beatriz Urda-Garcรญa
- Best Poster Method: Arne Wehling
- Best Poster Application: Sebastian Urquiza-Zurich
- Best Poster Tool: Estefania Torrejon
Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!
- Best Talk: Beatriz Urda-Garcรญa
- Best Poster Method: Arne Wehling
- Best Poster Application: Sebastian Urquiza-Zurich
- Best Poster Tool: Estefania Torrejon
Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!
๐๐ Our third featured winner from the #NetBio #Cytoscape Visualization Contest submitted by Michael Costanzo.
This beautiful visualization maps genetic interaction profile similarities among 3,784 human genes in HAP1 cells and their role in biological processes.
doi.org/10.1101/2025...
This beautiful visualization maps genetic interaction profile similarities among 3,784 human genes in HAP1 cells and their role in biological processes.
doi.org/10.1101/2025...
July 24, 2025 at 3:30 PM
๐๐ Our third featured winner from the #NetBio #Cytoscape Visualization Contest submitted by Michael Costanzo.
This beautiful visualization maps genetic interaction profile similarities among 3,784 human genes in HAP1 cells and their role in biological processes.
doi.org/10.1101/2025...
This beautiful visualization maps genetic interaction profile similarities among 3,784 human genes in HAP1 cells and their role in biological processes.
doi.org/10.1101/2025...
Another beautiful winning #Cytoscape #NetBio visualization by Jong Lim with a special and poetic description!
"...Formed in a circular format to resemble a human eye with tears, the network represents the genetic uphill battle some face from the moment they are born."
woobox.com/b9poce/galle...
"...Formed in a circular format to resemble a human eye with tears, the network represents the genetic uphill battle some face from the moment they are born."
woobox.com/b9poce/galle...
July 24, 2025 at 3:21 PM
Another beautiful winning #Cytoscape #NetBio visualization by Jong Lim with a special and poetic description!
"...Formed in a circular format to resemble a human eye with tears, the network represents the genetic uphill battle some face from the moment they are born."
woobox.com/b9poce/galle...
"...Formed in a circular format to resemble a human eye with tears, the network represents the genetic uphill battle some face from the moment they are born."
woobox.com/b9poce/galle...
Thank you, @cantinilab.bsky.social for the fantastic keynote and for sharing your insights with the #NetBio community at #ISMBECCB2025! It was a real pleasure having you with us.
Safe travels back to Paris! ๐โ๏ธ
Safe travels back to Paris! ๐โ๏ธ
July 24, 2025 at 10:06 AM
Thank you, @cantinilab.bsky.social for the fantastic keynote and for sharing your insights with the #NetBio community at #ISMBECCB2025! It was a real pleasure having you with us.
Safe travels back to Paris! ๐โ๏ธ
Safe travels back to Paris! ๐โ๏ธ
โจ Awesome network visualizations created by one of the winners of the #NetBio #Cytoscape visualization contest:
Alejandra Paulina Perez Gonzalez
#ISMBECCB2025
Alejandra Paulina Perez Gonzalez
#ISMBECCB2025
July 23, 2025 at 6:13 PM
โจ Awesome network visualizations created by one of the winners of the #NetBio #Cytoscape visualization contest:
Alejandra Paulina Perez Gonzalez
#ISMBECCB2025
Alejandra Paulina Perez Gonzalez
#ISMBECCB2025
๐ And now it is time to introduce our last and shared keynote with the Microbiome COSI:
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
July 23, 2025 at 1:51 PM
๐ And now it is time to introduce our last and shared keynote with the Microbiome COSI:
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
๐ We wrap up our #NetBio track 2025 with announcing the #Cytoscape network visualization competition winners (woobox.com/b9poce)
Congrats:
1: Alejandra Paulina Perez Gonzalez
2. Michael Costanzo
3. Jong Chan Lim
๐๐๐ Exciting to have Alejandra and Jong in the audience and congrats to Michael!
Congrats:
1: Alejandra Paulina Perez Gonzalez
2. Michael Costanzo
3. Jong Chan Lim
๐๐๐ Exciting to have Alejandra and Jong in the audience and congrats to Michael!
NetBio Cytoscape Visualization Competition
woobox.com
July 23, 2025 at 1:33 PM
๐ We wrap up our #NetBio track 2025 with announcing the #Cytoscape network visualization competition winners (woobox.com/b9poce)
Congrats:
1: Alejandra Paulina Perez Gonzalez
2. Michael Costanzo
3. Jong Chan Lim
๐๐๐ Exciting to have Alejandra and Jong in the audience and congrats to Michael!
Congrats:
1: Alejandra Paulina Perez Gonzalez
2. Michael Costanzo
3. Jong Chan Lim
๐๐๐ Exciting to have Alejandra and Jong in the audience and congrats to Michael!
โจ And it's already time for the last selected #NetBio talk! Piotr Sliwa is presenting "Multilayer Networks Identify Clinically Relevant Patient Endotypes in COVID-19 and Sepsis"
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 1:10 PM
โจ And it's already time for the last selected #NetBio talk! Piotr Sliwa is presenting "Multilayer Networks Identify Clinically Relevant Patient Endotypes in COVID-19 and Sepsis"
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
๐ฃLast speaker of the #NetBio morning session:
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 11:51 AM
๐ฃLast speaker of the #NetBio morning session:
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
โจJohannes Kersting just presented his cool #Nextflow Pipeline for Network-Based Disease Module Identification and Drug Repurposing
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
July 23, 2025 at 11:38 AM
โจJohannes Kersting just presented his cool #Nextflow Pipeline for Network-Based Disease Module Identification and Drug Repurposing
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
๐ค Next up is Terence Egbelo
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! โจ
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! โจ
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
July 23, 2025 at 11:06 AM
๐ค Next up is Terence Egbelo
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! โจ
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! โจ
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
๐ Nicoleta Siminea just presented her work on "Interactome-based computational solutions to support personalized drug therapy decisions in glioblastoma" at the #NetBio track at #ISMBECCB2025!
July 23, 2025 at 11:01 AM
๐ Nicoleta Siminea just presented her work on "Interactome-based computational solutions to support personalized drug therapy decisions in glioblastoma" at the #NetBio track at #ISMBECCB2025!
#NetBio talks are continuing in room 1B:
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 10:33 AM
#NetBio talks are continuing in room 1B:
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
โจAfter a very well-attended first poster session with lots of discussions, we are now starting with the second day of #NetBio at #ISMBECCB2025!
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
July 23, 2025 at 10:30 AM
โจAfter a very well-attended first poster session with lots of discussions, we are now starting with the second day of #NetBio at #ISMBECCB2025!
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
โIt's already time for our last #NetBio speaker of today:
โจ๐We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" โจ
#ISMBECCB2025 #NetworkBiology
โจ๐We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" โจ
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 4:29 PM
โIt's already time for our last #NetBio speaker of today:
โจ๐We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" โจ
#ISMBECCB2025 #NetworkBiology
โจ๐We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" โจ
#ISMBECCB2025 #NetworkBiology
๐ค Next talk at #NetBio is by Aritra Bose from IBM Research presenting their work on "Quantum Random Walks for Biomarker Discovery in Biomolecular Networks".
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 4:05 PM
๐ค Next talk at #NetBio is by Aritra Bose from IBM Research presenting their work on "Quantum Random Walks for Biomarker Discovery in Biomolecular Networks".
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
After lots of #NetBio discussions over coffee, we are now starting the last session for today:
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
July 22, 2025 at 3:45 PM
After lots of #NetBio discussions over coffee, we are now starting the last session for today:
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
Web application: disease-perception.bsc.es/rgenexcom/
July 22, 2025 at 2:55 PM
Web application: disease-perception.bsc.es/rgenexcom/
๐ค Next talk at #NetBio:
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 2:49 PM
๐ค Next talk at #NetBio:
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
โ๏ธ The #NetBio COSI team will be around during the 4PM coffee break in Room 1B!
Come chat about the COSI, getting involved, or anything else. Weโve got open roles (incl. one Abstract Chair position) for next year. Letโs connect if you are interested! #ISMBECCB2025
Come chat about the COSI, getting involved, or anything else. Weโve got open roles (incl. one Abstract Chair position) for next year. Letโs connect if you are interested! #ISMBECCB2025
July 22, 2025 at 2:36 PM
โ๏ธ The #NetBio COSI team will be around during the 4PM coffee break in Room 1B!
Come chat about the COSI, getting involved, or anything else. Weโve got open roles (incl. one Abstract Chair position) for next year. Letโs connect if you are interested! #ISMBECCB2025
Come chat about the COSI, getting involved, or anything else. Weโve got open roles (incl. one Abstract Chair position) for next year. Letโs connect if you are interested! #ISMBECCB2025
๐ Next in #NetBio at #ISMBECCB2025
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
July 22, 2025 at 2:27 PM
๐ Next in #NetBio at #ISMBECCB2025
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
๐ค Next #NetBio talk:
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 2:06 PM
๐ค Next #NetBio talk:
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
๐๏ธNext #NetBio talk: Kivilcim Ozturk uncovers how mutations in intrinsically disordered regions (IDRs) disrupt protein interactions in cancer, revealing potential cellular vulnerabilities.
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 1:47 PM
๐๏ธNext #NetBio talk: Kivilcim Ozturk uncovers how mutations in intrinsically disordered regions (IDRs) disrupt protein interactions in cancer, revealing potential cellular vulnerabilities.
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology