NetBio COSI
@netbio.bsky.social
ISCB's Network Biology Community of Special Interest
👏🏆 Congrats to our #NetBio2025 prize winners:
- Best Talk: Beatriz Urda-García
- Best Poster Method: Arne Wehling
- Best Poster Application: Sebastian Urquiza-Zurich
- Best Poster Tool: Estefania Torrejon
Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!
- Best Talk: Beatriz Urda-García
- Best Poster Method: Arne Wehling
- Best Poster Application: Sebastian Urquiza-Zurich
- Best Poster Tool: Estefania Torrejon
Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!
July 24, 2025 at 5:03 PM
👏🏆 Congrats to our #NetBio2025 prize winners:
- Best Talk: Beatriz Urda-García
- Best Poster Method: Arne Wehling
- Best Poster Application: Sebastian Urquiza-Zurich
- Best Poster Tool: Estefania Torrejon
Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!
- Best Talk: Beatriz Urda-García
- Best Poster Method: Arne Wehling
- Best Poster Application: Sebastian Urquiza-Zurich
- Best Poster Tool: Estefania Torrejon
Thanks to all the (poster) presenters!!! It's amazing to have you in our community!!
🎉🏆 Our third featured winner from the #NetBio #Cytoscape Visualization Contest submitted by Michael Costanzo.
This beautiful visualization maps genetic interaction profile similarities among 3,784 human genes in HAP1 cells and their role in biological processes.
doi.org/10.1101/2025...
This beautiful visualization maps genetic interaction profile similarities among 3,784 human genes in HAP1 cells and their role in biological processes.
doi.org/10.1101/2025...
July 24, 2025 at 3:30 PM
🎉🏆 Our third featured winner from the #NetBio #Cytoscape Visualization Contest submitted by Michael Costanzo.
This beautiful visualization maps genetic interaction profile similarities among 3,784 human genes in HAP1 cells and their role in biological processes.
doi.org/10.1101/2025...
This beautiful visualization maps genetic interaction profile similarities among 3,784 human genes in HAP1 cells and their role in biological processes.
doi.org/10.1101/2025...
Another beautiful winning #Cytoscape #NetBio visualization by Jong Lim with a special and poetic description!
"...Formed in a circular format to resemble a human eye with tears, the network represents the genetic uphill battle some face from the moment they are born."
woobox.com/b9poce/galle...
"...Formed in a circular format to resemble a human eye with tears, the network represents the genetic uphill battle some face from the moment they are born."
woobox.com/b9poce/galle...
July 24, 2025 at 3:21 PM
Another beautiful winning #Cytoscape #NetBio visualization by Jong Lim with a special and poetic description!
"...Formed in a circular format to resemble a human eye with tears, the network represents the genetic uphill battle some face from the moment they are born."
woobox.com/b9poce/galle...
"...Formed in a circular format to resemble a human eye with tears, the network represents the genetic uphill battle some face from the moment they are born."
woobox.com/b9poce/galle...
✨ Awesome network visualizations created by one of the winners of the #NetBio #Cytoscape visualization contest:
Alejandra Paulina Perez Gonzalez
#ISMBECCB2025
Alejandra Paulina Perez Gonzalez
#ISMBECCB2025
July 23, 2025 at 6:13 PM
✨ Awesome network visualizations created by one of the winners of the #NetBio #Cytoscape visualization contest:
Alejandra Paulina Perez Gonzalez
#ISMBECCB2025
Alejandra Paulina Perez Gonzalez
#ISMBECCB2025
🎉 And now it is time to introduce our last and shared keynote with the Microbiome COSI:
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
July 23, 2025 at 1:51 PM
🎉 And now it is time to introduce our last and shared keynote with the Microbiome COSI:
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
@fionabrinkman.bsky.social is talking about "Microbiome multitudes and metadata madness" connecting the #Microbiome and #NetworkBiology communities!
#ISMBECCB2025
✨ And it's already time for the last selected #NetBio talk! Piotr Sliwa is presenting "Multilayer Networks Identify Clinically Relevant Patient Endotypes in COVID-19 and Sepsis"
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 1:10 PM
✨ And it's already time for the last selected #NetBio talk! Piotr Sliwa is presenting "Multilayer Networks Identify Clinically Relevant Patient Endotypes in COVID-19 and Sepsis"
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
📣Last speaker of the #NetBio morning session:
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 11:51 AM
📣Last speaker of the #NetBio morning session:
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
Samuele Firmani is presenting GATE (Graph Antiviral Target Explorer) to predict disease genes in viral infections with Message Passing Neural Networks"
#ISMBECCB2025 #NetworkBiology
✨Johannes Kersting just presented his cool #Nextflow Pipeline for Network-Based Disease Module Identification and Drug Repurposing
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
July 23, 2025 at 11:38 AM
✨Johannes Kersting just presented his cool #Nextflow Pipeline for Network-Based Disease Module Identification and Drug Repurposing
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
nf-co.re/diseasemodul...
github.com/nf-core/dise...
#ISMBECCB2025 #NetworkBiology #NetBio
🎤 Next up is Terence Egbelo
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
July 23, 2025 at 11:06 AM
🎤 Next up is Terence Egbelo
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
He is sharing his research on "Improving Target-Adverse Event Association Prediction by Mitigating Topological Imbalance in Knowledge Graphs" with the #NetBio audience! ✨
#ISMBECCB2025 #NetworkBiology #KnowledgeGraphs
🔊 Nicoleta Siminea just presented her work on "Interactome-based computational solutions to support personalized drug therapy decisions in glioblastoma" at the #NetBio track at #ISMBECCB2025!
July 23, 2025 at 11:01 AM
🔊 Nicoleta Siminea just presented her work on "Interactome-based computational solutions to support personalized drug therapy decisions in glioblastoma" at the #NetBio track at #ISMBECCB2025!
#NetBio talks are continuing in room 1B:
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
July 23, 2025 at 10:33 AM
#NetBio talks are continuing in room 1B:
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
Dongmin Bang is presenting his proceeding paper on "MixingDTA: Improved Drug-Target Affinity Prediction by Extending Mixup with Guilt-By-Association"
doi.org/10.1093/bioi...
#ISMBECCB2025 #NetworkBiology
✨After a very well-attended first poster session with lots of discussions, we are now starting with the second day of #NetBio at #ISMBECCB2025!
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
July 23, 2025 at 10:30 AM
✨After a very well-attended first poster session with lots of discussions, we are now starting with the second day of #NetBio at #ISMBECCB2025!
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
Make sure you visit our #NetworkBiology posters in the next two days! Lots of:
- tools/resources
- methods/algorithms
- biomedical applications/use cases
⌛It's already time for our last #NetBio speaker of today:
✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨
#ISMBECCB2025 #NetworkBiology
✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 4:29 PM
⌛It's already time for our last #NetBio speaker of today:
✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨
#ISMBECCB2025 #NetworkBiology
✨🔊We are excited to welcome our 2nd keynote speaker Jan Baumbach talking about "Quantum computing for network medicine-based epistatic disease mechanism mining - Fake it till you make it?" ✨
#ISMBECCB2025 #NetworkBiology
🎤 Next talk at #NetBio is by Aritra Bose from IBM Research presenting their work on "Quantum Random Walks for Biomarker Discovery in Biomolecular Networks".
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 4:05 PM
🎤 Next talk at #NetBio is by Aritra Bose from IBM Research presenting their work on "Quantum Random Walks for Biomarker Discovery in Biomolecular Networks".
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
After lots of #NetBio discussions over coffee, we are now starting the last session for today:
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
July 22, 2025 at 3:45 PM
After lots of #NetBio discussions over coffee, we are now starting the last session for today:
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
Lucas Gillenwater is presenting his #ISMBECCB2025 proceeding paper "GRACKLE: An interpretable matrix factorization approach for biomedical representation learning".
doi.org/10.1093/bioi...
#NetworkBiology
🎤 Next talk at #NetBio:
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 2:49 PM
🎤 Next talk at #NetBio:
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
@beatrizurda.bsky.social: Disentangling the genetic and non-genetic origin of disease co-occurrences
#ISMBECCB2025 #NetworkBiology
🔊 Next in #NetBio at #ISMBECCB2025
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
July 22, 2025 at 2:27 PM
🔊 Next in #NetBio at #ISMBECCB2025
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
Dewei Hu presents:
SPACE: STRING proteins as complementary embeddings
Cross-species network embeddings meet protein function prediction, leveraging STRING across 1,300+ eukaryotes. A powerful complement to sequence embeddings!
#NetworkBiology
🎤 Next #NetBio talk:
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 2:06 PM
🎤 Next #NetBio talk:
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
Erik Sonnhammer presents #FunCoup6, an upgrade to the functional association network database, now with enhanced regulatory links, a redesigned interface, and powerful new tools for comparative interactomics and disease module analysis.
funcoup.org
#ISMBECCB2025 #NetworkBiology
🎙️Next #NetBio talk: Kivilcim Ozturk uncovers how mutations in intrinsically disordered regions (IDRs) disrupt protein interactions in cancer, revealing potential cellular vulnerabilities.
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 1:47 PM
🎙️Next #NetBio talk: Kivilcim Ozturk uncovers how mutations in intrinsically disordered regions (IDRs) disrupt protein interactions in cancer, revealing potential cellular vulnerabilities.
#ISMBECCB2025 #NetworkBiology
#ISMBECCB2025 #NetworkBiology
🔊 Now presenting in our #NetBio track: Ibrahim Alsaggaf introduces Sup-EGsCL, a contrastive learning method using enhanced Gaussian noise augmentation to better predict gene longevity effects from protein-protein interaction networks.
github.com/ibrahimsagga...
#ISMBECCB2025 #NetworkBiology
github.com/ibrahimsagga...
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 1:31 PM
🔊 Now presenting in our #NetBio track: Ibrahim Alsaggaf introduces Sup-EGsCL, a contrastive learning method using enhanced Gaussian noise augmentation to better predict gene longevity effects from protein-protein interaction networks.
github.com/ibrahimsagga...
#ISMBECCB2025 #NetworkBiology
github.com/ibrahimsagga...
#ISMBECCB2025 #NetworkBiology
🔊 Up next at #NetBio: Sindhura Kommu presents her work on "Prediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning."
She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨!
#ISMBECCB2025 #NetworkBiology
She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨!
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 1:10 PM
🔊 Up next at #NetBio: Sindhura Kommu presents her work on "Prediction of Gene Regulatory Connections with Joint Single-Cell Foundation Models and Graph-Based Learning."
She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨!
#ISMBECCB2025 #NetworkBiology
She couldn’t join us onsite in Liverpool, but is connecting live to share her research ✨!
#ISMBECCB2025 #NetworkBiology
Our #NetBio track will continue in a few minutes in room 1B with another set of great talks!
Have you already seen our new logo ✨👏? Thanks @romanayanez.bsky.social for the beautiful design 🥰!
Have you already seen our new logo ✨👏? Thanks @romanayanez.bsky.social for the beautiful design 🥰!
July 22, 2025 at 1:00 PM
Our #NetBio track will continue in a few minutes in room 1B with another set of great talks!
Have you already seen our new logo ✨👏? Thanks @romanayanez.bsky.social for the beautiful design 🥰!
Have you already seen our new logo ✨👏? Thanks @romanayanez.bsky.social for the beautiful design 🥰!
🧬Excited to welcome Giulia Cesaro to present #CellGOSSIP, a novel strategy to decode cell-specific intracellular signaling from noisy single-cell data using personalized network propagation.
🎯 Reveal hidden pathway dynamics and functional cell states!
#ISMBECCB2025 #NetworkBiology #NetBio
🎯 Reveal hidden pathway dynamics and functional cell states!
#ISMBECCB2025 #NetworkBiology #NetBio
July 22, 2025 at 11:50 AM
🧬Excited to welcome Giulia Cesaro to present #CellGOSSIP, a novel strategy to decode cell-specific intracellular signaling from noisy single-cell data using personalized network propagation.
🎯 Reveal hidden pathway dynamics and functional cell states!
#ISMBECCB2025 #NetworkBiology #NetBio
🎯 Reveal hidden pathway dynamics and functional cell states!
#ISMBECCB2025 #NetworkBiology #NetBio
📢 Next up: @SaniyaKhullar presents NetREm, a powerful new method revealing how transcription factors coordinate gene regulation across cell types.
From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation.
#ISMBECCB2025 #NetworkBiology
From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation.
#ISMBECCB2025 #NetworkBiology
July 22, 2025 at 11:28 AM
📢 Next up: @SaniyaKhullar presents NetREm, a powerful new method revealing how transcription factors coordinate gene regulation across cell types.
From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation.
#ISMBECCB2025 #NetworkBiology
From immune cells to Alzheimer’s brains, NetREm maps regulatory networks with real-world validation.
#ISMBECCB2025 #NetworkBiology