Mervin Fansler
LightNews LightNews
banner
mfansler.bsky.social
Mervin Fansler
@mfansler.bsky.social
1.1K followers 650 following 9 posts
Postdoc in Cvejic Group, BRIC, Københavns Universitet. PhD from Mayr Lab at Sloan Kettering Institute. Reproducible research enthusiast. Conda Forge R Team. Creator of scUTRquant.
Posts Replies Media Videos
mfansler.bsky.social
Maybe this is it: `usethis::use_rcpp_armadillo`

github.com/r-lib/usethi...
usethis/R/rcpp.R at f8a7bb7eef0fbb11cc81aa182c0f13ffb3e2695f · r-lib/usethis
Set up commonly used 📦 components. Contribute to r-lib/usethis development by creating an account on GitHub.
github.com
September 29, 2025 at 9:44 AM
mfansler.bsky.social
"attack-seq" so that DEFND-seq has a counterpart

pubmed.ncbi.nlm.nih.gov/39939719/
Scalable co-sequencing of RNA and DNA from individual nuclei - PubMed
The ideal technology for directly investigating the relationship between genotype and phenotype would analyze both RNA and DNA genome-wide and with single-cell resolution; however, existing tools lack...
pubmed.ncbi.nlm.nih.gov
September 11, 2025 at 8:11 PM
mfansler.bsky.social
Answering my own question - manuscript shows going down to 50K cells/reaction.
December 2, 2024 at 9:43 AM
mfansler.bsky.social
Neat work - congrats!

Curious what the input requirements are. How many cells/sample does one need to start with to run the protocol and how many samples for reasonable statistical power? Does it need a non-specific background run?
December 1, 2024 at 10:05 PM