Mark Ziemann 🇺🇦🌻🦩
@mdziemann.genomic.social.ap.brid.gy
Bioinformatics researcher.
Supports Ukraine.
Hates fascism.
🌉 bridged from ⁂ https://genomic.social/@mdziemann, follow @ap.brid.gy to interact
Supports Ukraine.
Hates fascism.
🌉 bridged from ⁂ https://genomic.social/@mdziemann, follow @ap.brid.gy to interact
Pinned
Original post on genomic.social
genomic.social
📣 The Digital Expression Explorer 2 database/webserver of RNA-seq data has been upgraded!
It has a better search tool, HDF5 bulk files, new plant species and a new data-on-demand request tool which I think you'll find useful. If there is a transcriptomic study you would like processed, simply […]
It has a better search tool, HDF5 bulk files, new plant species and a new data-on-demand request tool which I think you'll find useful. If there is a transcriptomic study you would like processed, simply […]
One thing that Snowden warned us about was "turnkey tyrrany"; the fact that the surveillance apparatus was set up outside of parliament oversight and power concentrated to the executive. It's pretty much playing out exactly as he warned...
January 20, 2026 at 12:14 AM
One thing that Snowden warned us about was "turnkey tyrrany"; the fact that the surveillance apparatus was set up outside of parliament oversight and power concentrated to the executive. It's pretty much playing out exactly as he warned...
My goal for 2026 is to boycott all USA products and totally get off their tech stack in favor of European and self hosted alternatives
January 16, 2026 at 10:29 PM
My goal for 2026 is to boycott all USA products and totally get off their tech stack in favor of European and self hosted alternatives
Reposted by Mark Ziemann 🇺🇦🌻🦩
BREAKING NEWS
Telephone Lines Cut in Iran!
Internet is down across Iran.
Rights group states at least 45 Iranians killed by regime forces during protests
Protesters arrested; family members unable to locate loved ones after arrest!
#aurefreepress #News […]
[Original post on mstdn.social]
Telephone Lines Cut in Iran!
Internet is down across Iran.
Rights group states at least 45 Iranians killed by regime forces during protests
Protesters arrested; family members unable to locate loved ones after arrest!
#aurefreepress #News […]
[Original post on mstdn.social]
January 8, 2026 at 7:54 PM
BREAKING NEWS
Telephone Lines Cut in Iran!
Internet is down across Iran.
Rights group states at least 45 Iranians killed by regime forces during protests
Protesters arrested; family members unable to locate loved ones after arrest!
#aurefreepress #News […]
[Original post on mstdn.social]
Telephone Lines Cut in Iran!
Internet is down across Iran.
Rights group states at least 45 Iranians killed by regime forces during protests
Protesters arrested; family members unable to locate loved ones after arrest!
#aurefreepress #News […]
[Original post on mstdn.social]
Based on what the USA is doing (and what Ukraine has gone through), it is a clear signal that every country needs nukes to protect itself, and anti proliferation is dead
January 3, 2026 at 10:21 PM
Based on what the USA is doing (and what Ukraine has gone through), it is a clear signal that every country needs nukes to protect itself, and anti proliferation is dead
Invading other countries and stealing their stuff is bad. Free countries should be severing any ties with the US regime right now
January 3, 2026 at 10:18 PM
Invading other countries and stealing their stuff is bad. Free countries should be severing any ties with the US regime right now
Aggressor states must be isolated, punished.
January 3, 2026 at 8:46 AM
Aggressor states must be isolated, punished.
Yes, you can use a single stick of DDR5 for bioinformatics and data analysis, incurring only a small drop in performance.
https://genomespot.blogspot.com/2026/01/yes-you-can-use-single-stick-of-ddr5.html
#bioinformatics #ram #ddr5 #ddr5memory
https://genomespot.blogspot.com/2026/01/yes-you-can-use-single-stick-of-ddr5.html
#bioinformatics #ram #ddr5 #ddr5memory
January 3, 2026 at 3:19 AM
Yes, you can use a single stick of DDR5 for bioinformatics and data analysis, incurring only a small drop in performance.
https://genomespot.blogspot.com/2026/01/yes-you-can-use-single-stick-of-ddr5.html
#bioinformatics #ram #ddr5 #ddr5memory
https://genomespot.blogspot.com/2026/01/yes-you-can-use-single-stick-of-ddr5.html
#bioinformatics #ram #ddr5 #ddr5memory
Family enjoyed a visit to Point Cook and had the beach all to ourselves
December 20, 2025 at 10:33 PM
Family enjoyed a visit to Point Cook and had the beach all to ourselves
Reposted by Mark Ziemann 🇺🇦🌻🦩
Closing out my year with a journal editor shocker 🧵
Checking new manuscripts today I reviewed a paper attributing 2 papers to me I did not write. A daft thing for an author to do of course. But intrigued I web searched up one of the titles and that's when it got real weird...
Checking new manuscripts today I reviewed a paper attributing 2 papers to me I did not write. A daft thing for an author to do of course. But intrigued I web searched up one of the titles and that's when it got real weird...
December 19, 2025 at 5:20 PM
Closing out my year with a journal editor shocker 🧵
Checking new manuscripts today I reviewed a paper attributing 2 papers to me I did not write. A daft thing for an author to do of course. But intrigued I web searched up one of the titles and that's when it got real weird...
Checking new manuscripts today I reviewed a paper attributing 2 papers to me I did not write. A daft thing for an author to do of course. But intrigued I web searched up one of the titles and that's when it got real weird...
Ukraine military continues to take out russian shadow fleet tankers. With increasing insurance costs, this could cut russian access to the Mediteranean.
Excellent analysis from "What's Going on With Shipping?" channel
https://www.youtube.com/watch?v=4kQ6cngw0Ns
Excellent analysis from "What's Going on With Shipping?" channel
https://www.youtube.com/watch?v=4kQ6cngw0Ns
December 11, 2025 at 2:05 AM
Ukraine military continues to take out russian shadow fleet tankers. With increasing insurance costs, this could cut russian access to the Mediteranean.
Excellent analysis from "What's Going on With Shipping?" channel
https://www.youtube.com/watch?v=4kQ6cngw0Ns
Excellent analysis from "What's Going on With Shipping?" channel
https://www.youtube.com/watch?v=4kQ6cngw0Ns
Holy shit RAM prices have gone nuts. In August I built a workstation with 192GB DDR5 costing $758 AUD for the memory. Same memory now would cost $2498
#ram
#ram
December 8, 2025 at 2:37 PM
Holy shit RAM prices have gone nuts. In August I built a workstation with 192GB DDR5 costing $758 AUD for the memory. Same memory now would cost $2498
#ram
#ram
Reposted by Mark Ziemann 🇺🇦🌻🦩
I directly helped a single human today (someone I really don’t “know”) and it is one of the most rewarding feelings ever. Help (freely) others, folks. You know things others don’t. You have experience they do not. You are amazing. So are they. This is how we get out of this mess and thrive.
December 6, 2025 at 10:49 PM
I directly helped a single human today (someone I really don’t “know”) and it is one of the most rewarding feelings ever. Help (freely) others, folks. You know things others don’t. You have experience they do not. You are amazing. So are they. This is how we get out of this mess and thrive.
Bunch of awesome #postrock shows coming up across Melbourne Brisbane and Sydney over the next 2 weeks!
https://mailchi.mp/c8fcd5d8f06b/birdsrobenewsletter-6795395?e=12b3ca6a39
https://mailchi.mp/c8fcd5d8f06b/birdsrobenewsletter-6795395?e=12b3ca6a39
BR15 bday tour this weekend feat COG, Caspian + Anika Nilles + Michael Cera Palin Australian Tour
mailchi.mp
December 4, 2025 at 7:10 AM
Bunch of awesome #postrock shows coming up across Melbourne Brisbane and Sydney over the next 2 weeks!
https://mailchi.mp/c8fcd5d8f06b/birdsrobenewsletter-6795395?e=12b3ca6a39
https://mailchi.mp/c8fcd5d8f06b/birdsrobenewsletter-6795395?e=12b3ca6a39
Pretty interesting new article looking at the gene expression differences caused by continuous exercise and what sprint interval training does.
#genomics
https://www.nature.com/articles/s41467-025-66625-8
#genomics
https://www.nature.com/articles/s41467-025-66625-8
Sprint interval exercise disrupts mitochondrial ultrastructure driving a unique mitochondrial stress response and remodelling in men - Nature Communications
Here the authors report a that sprint interval exercise triggers mitochondrial stress and quality control in skeletal muscle in young healthy men, promoting enhanced mitochondrial function and a remodelling after 8 weeks of training.
www.nature.com
December 4, 2025 at 2:35 AM
Pretty interesting new article looking at the gene expression differences caused by continuous exercise and what sprint interval training does.
#genomics
https://www.nature.com/articles/s41467-025-66625-8
#genomics
https://www.nature.com/articles/s41467-025-66625-8
Looks like biorxiv.org is down - can we blame this on AI scrapers?
December 2, 2025 at 3:40 AM
Looks like biorxiv.org is down - can we blame this on AI scrapers?
russia's Rosneft reports 70% fall in 9-month net income
rosneft is russia's second biggest firm and biggest oil producer if this continues, russia will be broke by the end of 2026
https://www.reuters.com/business/energy/russias-rosneft-reports-70-fall-9-month-net-income-2025-11-28/
rosneft is russia's second biggest firm and biggest oil producer if this continues, russia will be broke by the end of 2026
https://www.reuters.com/business/energy/russias-rosneft-reports-70-fall-9-month-net-income-2025-11-28/
December 1, 2025 at 11:33 PM
russia's Rosneft reports 70% fall in 9-month net income
rosneft is russia's second biggest firm and biggest oil producer if this continues, russia will be broke by the end of 2026
https://www.reuters.com/business/energy/russias-rosneft-reports-70-fall-9-month-net-income-2025-11-28/
rosneft is russia's second biggest firm and biggest oil producer if this continues, russia will be broke by the end of 2026
https://www.reuters.com/business/energy/russias-rosneft-reports-70-fall-9-month-net-income-2025-11-28/
Reposted by Mark Ziemann 🇺🇦🌻🦩
Can we please discuss accessibility at conferences?
When organizers and schedules assume that everyone can walk fast and climb stairs, people with mobility issues (visible or invisible) might feel excluded.
/
When organizers and schedules assume that everyone can walk fast and climb stairs, people with mobility issues (visible or invisible) might feel excluded.
/
November 20, 2025 at 8:08 AM
Can we please discuss accessibility at conferences?
When organizers and schedules assume that everyone can walk fast and climb stairs, people with mobility issues (visible or invisible) might feel excluded.
/
When organizers and schedules assume that everyone can walk fast and climb stairs, people with mobility issues (visible or invisible) might feel excluded.
/
Natalie Anderson reports on the issues around animal ethics, especially with banned experimental setups like forced smoke inhalation. Raises questions about lack of data collection and need for central registry of animal ethics committees and animal experiments.
#aimos2025
#aimos2025
November 19, 2025 at 3:28 AM
Natalie Anderson reports on the issues around animal ethics, especially with banned experimental setups like forced smoke inhalation. Raises questions about lack of data collection and need for central registry of animal ethics committees and animal experiments.
#aimos2025
#aimos2025
Metaresearcher Alexander Gibson reports on the publication of stroke and diabetes diagnostic models in the biomedical literature based on dubious datasets obtained from Kaggle. I say dubious, but data have hallmarks of synthetic or bogus measurements, for learning machine learning, not for […]
Original post on genomic.social
genomic.social
November 19, 2025 at 3:05 AM
Metaresearcher Alexander Gibson reports on the publication of stroke and diabetes diagnostic models in the biomedical literature based on dubious datasets obtained from Kaggle. I say dubious, but data have hallmarks of synthetic or bogus measurements, for learning machine learning, not for […]
Reposted by Mark Ziemann 🇺🇦🌻🦩
Good morning from Sydney, where we are getting ready for the #AIMOS2025 conference.
Jen Beaudry @drjbeaudry.bsky.social (@aimosinc.bsky.social President and Chair) and Joanna Diong (Co-Chair) are welcoming us into the room.
aimos-inc.github.io/aimos.confer...
Jen Beaudry @drjbeaudry.bsky.social (@aimosinc.bsky.social President and Chair) and Joanna Diong (Co-Chair) are welcoming us into the room.
aimos-inc.github.io/aimos.confer...
November 18, 2025 at 10:37 PM
Good morning from Sydney, where we are getting ready for the #AIMOS2025 conference.
Jen Beaudry @drjbeaudry.bsky.social (@aimosinc.bsky.social President and Chair) and Joanna Diong (Co-Chair) are welcoming us into the room.
aimos-inc.github.io/aimos.confer...
Jen Beaudry @drjbeaudry.bsky.social (@aimosinc.bsky.social President and Chair) and Joanna Diong (Co-Chair) are welcoming us into the room.
aimos-inc.github.io/aimos.confer...
Reposted by Mark Ziemann 🇺🇦🌻🦩
I managed to find an easy solution to have reproducible environment using #guix time-machine while still coding at the comfort of my own IDE.
I wrote a very short blog post about how to set it up in about 5 minutes along with example codes for R and etc […]
I wrote a very short blog post about how to set it up in about 5 minutes along with example codes for R and etc […]
Original post on fosstodon.org
fosstodon.org
November 12, 2025 at 1:28 PM
I managed to find an easy solution to have reproducible environment using #guix time-machine while still coding at the comfort of my own IDE.
I wrote a very short blog post about how to set it up in about 5 minutes along with example codes for R and etc […]
I wrote a very short blog post about how to set it up in about 5 minutes along with example codes for R and etc […]
New diamond open access journal Replication Research welcomes reports of replication of previous works. #academicchatter
https://www.uni-muenster.de/Ejournals/index.php/replicationresearch/index
https://www.uni-muenster.de/Ejournals/index.php/replicationresearch/index
Replication Research
Replication Research is a diamond open-access and researcher-led journal that publishes reproductions, replications, and conceptual articles on repetitive research
www.uni-muenster.de
November 12, 2025 at 9:54 AM
New diamond open access journal Replication Research welcomes reports of replication of previous works. #academicchatter
https://www.uni-muenster.de/Ejournals/index.php/replicationresearch/index
https://www.uni-muenster.de/Ejournals/index.php/replicationresearch/index
Reposted by Mark Ziemann 🇺🇦🌻🦩
November 12, 2025 at 2:00 AM
Reposted by Mark Ziemann 🇺🇦🌻🦩
Ten essential tips for robust statistics in cell biology www.nature.com/articles/s41... (read free: rdcu.be/eOl8q) 🧬🖥️🧪 1/3...
November 5, 2025 at 9:48 AM
Ten essential tips for robust statistics in cell biology www.nature.com/articles/s41... (read free: rdcu.be/eOl8q) 🧬🖥️🧪 1/3...
Enjoying this fun, quirky electronic music from artist called Ninajirachi
https://ninajirachi.bandcamp.com/album/i-love-my-computer
https://ninajirachi.bandcamp.com/album/i-love-my-computer
November 3, 2025 at 11:29 PM
Enjoying this fun, quirky electronic music from artist called Ninajirachi
https://ninajirachi.bandcamp.com/album/i-love-my-computer
https://ninajirachi.bandcamp.com/album/i-love-my-computer