Matthieu Montes
@matthieumontes.bsky.social
Professor detached@CNRS/Sorbonne Université, ERC and IUF fellow, co-founder@qubit_pharma, structural bioinformatics, Chemoinformatics, molecular visualization
Pinned
GitHub - VTX-Molecular-Visualization/VTX
Contribute to VTX-Molecular-Visualization/VTX development by creating an account on GitHub.
github.com
New publication out!
doi.org/10.1093/bioi...
VTX is open source and freely accessible for non commercial use! github.com/VTX-Molecula...
Builds available at vtx.drugdesign.fr
doi.org/10.1093/bioi...
VTX is open source and freely accessible for non commercial use! github.com/VTX-Molecula...
Builds available at vtx.drugdesign.fr
Reposted by Matthieu Montes
And the legacy continues! 😊
@amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social #EMBOIntegMod25 ! 🍀🧿
@amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social #EMBOIntegMod25 ! 🍀🧿
October 6, 2025 at 1:13 PM
And the legacy continues! 😊
@amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social #EMBOIntegMod25 ! 🍀🧿
@amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social #EMBOIntegMod25 ! 🍀🧿
Reposted by Matthieu Montes
Going to Izmir for the meetings.embo.org/event/25-bio...
I will talk on monday about interactive molecular visualization and simulation methods! See you there!
Thanks to the organizers for the invitation! @ezgikaraca.bsky.social @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
I will talk on monday about interactive molecular visualization and simulation methods! See you there!
Thanks to the organizers for the invitation! @ezgikaraca.bsky.social @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
Integrative modelling of biomolecular interactions
Experimental structural studies of interactions can be costly, low-throughput, and challenging. Therefore, computational methods aiming to model protein complexes are particularly valuable. The accur…
meetings.embo.org
September 27, 2025 at 8:39 AM
Going to Izmir for the meetings.embo.org/event/25-bio...
I will talk on monday about interactive molecular visualization and simulation methods! See you there!
Thanks to the organizers for the invitation! @ezgikaraca.bsky.social @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
I will talk on monday about interactive molecular visualization and simulation methods! See you there!
Thanks to the organizers for the invitation! @ezgikaraca.bsky.social @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
A junior chair professor position in computer science / chemoinformatics / structural bioinformatics is available in my former team in CNAM, Paris, France
Please contact Nathalie Lagarde for more details (nathalie.lagarde@lecnam.net)
Please contact Nathalie Lagarde for more details (nathalie.lagarde@lecnam.net)
Annonce_CPJ_Cnam | Nathalie Lagarde
Un poste de Chaire de Professeur Junior (CPJ) est ouvert dans notre équipe de bioinformatique structurale appartenant au laboratoire GBCM du Conservatoire National des Arts et Métiers (Paris).
👉 Profi...
www.linkedin.com
September 24, 2025 at 7:59 AM
A junior chair professor position in computer science / chemoinformatics / structural bioinformatics is available in my former team in CNAM, Paris, France
Please contact Nathalie Lagarde for more details (nathalie.lagarde@lecnam.net)
Please contact Nathalie Lagarde for more details (nathalie.lagarde@lecnam.net)
Reposted by Matthieu Montes
Only a few days left to apply for our EMBO course with a great lineup of speakers and tutors! Please feel free to RT!
Course website: meetings.embo.org/event/25-bio...
Organizers: myself, @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
Location: www.ibg.edu.tr
Course website: meetings.embo.org/event/25-bio...
Organizers: myself, @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
Location: www.ibg.edu.tr
June 11, 2025 at 8:48 AM
Only a few days left to apply for our EMBO course with a great lineup of speakers and tutors! Please feel free to RT!
Course website: meetings.embo.org/event/25-bio...
Organizers: myself, @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
Location: www.ibg.edu.tr
Course website: meetings.embo.org/event/25-bio...
Organizers: myself, @amjjbonvin.bsky.social @bioinfo.se @lindorfflarsen.bsky.social
Location: www.ibg.edu.tr
New paper out www.frontiersin.org/journals/bio...
VTX is available at github.com/VTX-Molecula...
@cg-martini.bsky.social @janstevens.bsky.social
@maximemaria.bsky.social @sguionni.bsky.social @pltc.bsky.social @qubit-pharma.bsky.social
VTX is available at github.com/VTX-Molecula...
@cg-martini.bsky.social @janstevens.bsky.social
@maximemaria.bsky.social @sguionni.bsky.social @pltc.bsky.social @qubit-pharma.bsky.social
June 10, 2025 at 7:43 AM
New publication out!
doi.org/10.1093/bioi...
VTX is open source and freely accessible for non commercial use! github.com/VTX-Molecula...
Builds available at vtx.drugdesign.fr
doi.org/10.1093/bioi...
VTX is open source and freely accessible for non commercial use! github.com/VTX-Molecula...
Builds available at vtx.drugdesign.fr
GitHub - VTX-Molecular-Visualization/VTX
Contribute to VTX-Molecular-Visualization/VTX development by creating an account on GitHub.
github.com
May 14, 2025 at 3:36 PM
New publication out!
doi.org/10.1093/bioi...
VTX is open source and freely accessible for non commercial use! github.com/VTX-Molecula...
Builds available at vtx.drugdesign.fr
doi.org/10.1093/bioi...
VTX is open source and freely accessible for non commercial use! github.com/VTX-Molecula...
Builds available at vtx.drugdesign.fr
Reposted by Matthieu Montes
1/3 #compchem Preprint: "Pushing the Accuracy Limit of Foundation Neural Network Models with Quantum Monte Carlo Forces & Path Integrals"
💫: arxiv.org/abs/2504.07948
An end-to-end multi-level exascale strategy to produce highly accurate quantum chemistry datasets (energies & forces): DFT/QMC/sCI.
💫: arxiv.org/abs/2504.07948
An end-to-end multi-level exascale strategy to produce highly accurate quantum chemistry datasets (energies & forces): DFT/QMC/sCI.
May 9, 2025 at 6:13 AM
1/3 #compchem Preprint: "Pushing the Accuracy Limit of Foundation Neural Network Models with Quantum Monte Carlo Forces & Path Integrals"
💫: arxiv.org/abs/2504.07948
An end-to-end multi-level exascale strategy to produce highly accurate quantum chemistry datasets (energies & forces): DFT/QMC/sCI.
💫: arxiv.org/abs/2504.07948
An end-to-end multi-level exascale strategy to produce highly accurate quantum chemistry datasets (energies & forces): DFT/QMC/sCI.
New paper out pubs.acs.org/doi/abs/10.1...
Combining Molecular Docking and Pharmacophore Models Predicts Ligand Binding of Endocrine-Disrupting Chemicals to Nuclear Receptors
Nuclear receptors form a family of proteins capable of accommodating a wide variety of small molecules in their ligand binding domain, ranging from therapeutic compounds to endocrine-disrupting chemic...
pubs.acs.org
May 2, 2025 at 7:29 AM
New paper out pubs.acs.org/doi/abs/10.1...
Talked about VTX and UDock at the Scripps yesterday, thanks @ludovicautin.bsky.social for the invitation and to Stefano Forli, Arthur Olson and Michel Sanner for the warm welcome and the great discussions! Next stop, Chicago!
March 25, 2025 at 8:46 PM
Talked about VTX and UDock at the Scripps yesterday, thanks @ludovicautin.bsky.social for the invitation and to Stefano Forli, Arthur Olson and Michel Sanner for the warm welcome and the great discussions! Next stop, Chicago!
Presenting UDock2 and recent developments on VTX at the APS meeting in Anaheim! Very rich interactions, thanks to the organizers for the invitation!
March 19, 2025 at 6:18 PM
Presenting UDock2 and recent developments on VTX at the APS meeting in Anaheim! Very rich interactions, thanks to the organizers for the invitation!
Exciting day yesterday at Mizzou where I presented our recent advances in molecular simulation and visualization and had super cool exchanges with the faculty and students in physics, comp sci and biochemistry departments. Thanks to Prof Xiaoqing Zou for the invitation! Next stop Anaheim
March 15, 2025 at 1:38 PM
Exciting day yesterday at Mizzou where I presented our recent advances in molecular simulation and visualization and had super cool exchanges with the faculty and students in physics, comp sci and biochemistry departments. Thanks to Prof Xiaoqing Zou for the invitation! Next stop Anaheim
New pre-print from the team! Interactive visualization of large molecular systems with VTX: example with a minimal whole-cell model from @cg-martini.bsky.social
arxiv.org/abs/2503.07181
VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
arxiv.org/abs/2503.07181
VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
Interactive visualization of large molecular systems with VTX: example with a minimal whole-cell model
VTX is an open-source molecular visualization software designed to overcome the scaling limitations of existing real-time molecular visualization software when handling massive molecular datasets. VTX...
arxiv.org
March 11, 2025 at 9:08 AM
New pre-print from the team! Interactive visualization of large molecular systems with VTX: example with a minimal whole-cell model from @cg-martini.bsky.social
arxiv.org/abs/2503.07181
VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
arxiv.org/abs/2503.07181
VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
Presented UDock and VTX today at Loria in Nancy, thanks Yasaman Karami and Ahmed Khakzad for the kind invitation!
February 28, 2025 at 2:45 PM
Presented UDock and VTX today at Loria in Nancy, thanks Yasaman Karami and Ahmed Khakzad for the kind invitation!
New visual of our work in progress on VTX. Illustration of the analytical SES of ribonuclease A (PDB ID 1DFJ) rendered with the upcoming pathtracer of VTX. The Analytical SES is generated with the method described in 10.1109/TVCG.2024.3380100 that will be available in an upcoming version of VTX.
February 18, 2025 at 3:31 PM
New visual of our work in progress on VTX. Illustration of the analytical SES of ribonuclease A (PDB ID 1DFJ) rendered with the upcoming pathtracer of VTX. The Analytical SES is generated with the method described in 10.1109/TVCG.2024.3380100 that will be available in an upcoming version of VTX.
New pre-print from the team! arxiv.org/abs/2501.12750
More news (and illustrations/videos) incoming about current developments !
VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
More news (and illustrations/videos) incoming about current developments !
VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
VTX: Real-time high-performance molecular structure and dynamics visualization software
Summary: VTX is a molecular visualization software capable to handle most molecular structures and dynamics trajectories file formats. It features a real-time high-performance molecular graphics engin...
arxiv.org
February 3, 2025 at 4:52 PM
New pre-print from the team! arxiv.org/abs/2501.12750
More news (and illustrations/videos) incoming about current developments !
VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
More news (and illustrations/videos) incoming about current developments !
VTX is available on GitHub github.com/VTX-Molecula... and at vtx.drugdesign.fr
Reposted by Matthieu Montes
The legendary EMBO Integrative Modeling Course is back! If you want to be in this picture in the 2025 edition, just go ahead and register at meetings.embo.org/event/25-bio...
Organized by myself & @amjjbonvin.bsky.social & @arneelof.bsky.social & @lindorfflarsen.bsky.social
Organized by myself & @amjjbonvin.bsky.social & @arneelof.bsky.social & @lindorfflarsen.bsky.social
January 2, 2025 at 8:57 AM
The legendary EMBO Integrative Modeling Course is back! If you want to be in this picture in the 2025 edition, just go ahead and register at meetings.embo.org/event/25-bio...
Organized by myself & @amjjbonvin.bsky.social & @arneelof.bsky.social & @lindorfflarsen.bsky.social
Organized by myself & @amjjbonvin.bsky.social & @arneelof.bsky.social & @lindorfflarsen.bsky.social
Detailed thread about the amazing work of @pltc.bsky.social about future representations and renderings that will be available in the upcoming version of VTX
The renderer used for the previous molecular illustrations has been developed to showcase an analytic molecular surface construction method on GPU targeting large molecular complex.
November 25, 2024 at 5:16 PM
Detailed thread about the amazing work of @pltc.bsky.social about future representations and renderings that will be available in the upcoming version of VTX
VTX on the cover of ChemMedChem!
November 25, 2024 at 5:03 PM
VTX on the cover of ChemMedChem!
Back from Limoges and the excellent PhD thesis of Cyprien Plateau-Holleville who notably developed a super efficient meshless representation of the SES for large molecular systems hal.science/hal-04550117 that will be available in the upcoming version of VTX vtx.drugdesign.fr
Efficient GPU computation of large protein Solvent-Excluded Surface
The Solvent-Excluded Surface (SES) is an essential representation of molecules which is massively used in molecular modeling and drug discovery since it represents the interacting surface between mole...
hal.science
November 25, 2024 at 4:48 PM
Back from Limoges and the excellent PhD thesis of Cyprien Plateau-Holleville who notably developed a super efficient meshless representation of the SES for large molecular systems hal.science/hal-04550117 that will be available in the upcoming version of VTX vtx.drugdesign.fr