Mark Robinson
banner
markrobinsonca.bsky.social
Mark Robinson
@markrobinsonca.bsky.social
statistical bioinformatics; canadian / swiss; #methodsmatter #rstats; open science advocate; grumpy towards prestige worshippers, excessive admin and bros; will sacrifice sleep for a sunrise.
https://robinsonlabuzh.github.io/
.. where some compelling demonstration of performance/usefulness is made (ideally done in a way that is interoperable with community efforts) .. and over the longer term, communities complement/consolidate with continuous benchmarks. In principle, Omnibenchmark supports both use cases.
October 24, 2025 at 2:38 PM
Interesting discussion! I agree that "extensive" benchmarks within method papers are not really the priority/essential. But at the same time, it would be tough to motivate having benchmark-less methods papers. I think we need a middle ground ..
October 24, 2025 at 2:38 PM
There are some similarities, but also some differences.

Scale: cells versus regions, but probably more importantly, Feature Space: segmentation focuses a lot on DNA and cell membrane markers (possibly transcript locations), while SAC is more about multi-cellular / neighbourhoods.
September 30, 2025 at 12:28 PM
Guest Editors:
Mark Robinson, University of Zurich
Fritz Joachim Sedlazeck, Baylor College of Medicine
Hong-Bin Shen, Shanghai Jiao Tong University
Jean Yee Hwa Yang, The University of Sydney
Xin Maizie Zhou, Vanderbilt University
April 29, 2025 at 7:08 AM