Li Tai Fang
@lethalfang.bsky.social
Genomic bioinformatics scientist. I maintain SomaticSeq as a hobby https://github.com/bioinform/somaticseq
Tough-on-crime, pro-meritocracy, anti-woke, anti-fascist centrist Democrat.
Continue kicking putin's nazi ass.
Tough-on-crime, pro-meritocracy, anti-woke, anti-fascist centrist Democrat.
Continue kicking putin's nazi ass.
Here is an example. A xgboost model to call somatic mutations. BQs make up some features. The decision tree doesn't care 40 or 28, but it does care if a tree makes a cut in the middle.
The left is the average BQs supporting variant call. The right is a p-value between variant calls and ref calls.
The left is the average BQs supporting variant call. The right is a p-value between variant calls and ref calls.
December 14, 2024 at 2:16 AM
Here is an example. A xgboost model to call somatic mutations. BQs make up some features. The decision tree doesn't care 40 or 28, but it does care if a tree makes a cut in the middle.
The left is the average BQs supporting variant call. The right is a p-value between variant calls and ref calls.
The left is the average BQs supporting variant call. The right is a p-value between variant calls and ref calls.
