KB
@kbchoi.bsky.social
Bioinformatician/Computational Biologist in cell/gene therapy world. Likes to think about new menu for my future K-food truck.
January 3, 2024 at 9:30 PM
December 27, 2023 at 5:26 PM
Reposted by KB
Mark(@sanbomics.bsky.social) put together a really nice video & walkthrough on using alevin-fry/simpleAF to process your single-cell RNA-seq data. If you're doing processing of such data, I recommend checking it out as a transparent & open alternative to CellRanger (& way faster) t.co/Hu9ueRduQ9! 🖥️🧬
Processing single-cell RNAseq counts with simpleaf (alevin-fry)
Simpleaf is a faster and more efficient alternative to other counters, such as cellranger, and it works with other single-cell chemistries. It is a wrapper f...
t.co
September 15, 2023 at 1:16 PM
Mark(@sanbomics.bsky.social) put together a really nice video & walkthrough on using alevin-fry/simpleAF to process your single-cell RNA-seq data. If you're doing processing of such data, I recommend checking it out as a transparent & open alternative to CellRanger (& way faster) t.co/Hu9ueRduQ9! 🖥️🧬
What is your go-to meta-analysis method for bulk RNA-seq datasets? I am trying to perform differential expression analysis.
September 15, 2023 at 11:29 AM
What is your go-to meta-analysis method for bulk RNA-seq datasets? I am trying to perform differential expression analysis.