Jonas Schiller
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jonas-bio.bsky.social
Jonas Schiller
@jonas-bio.bsky.social
👨‍🔬 Predoctoral Fellow at @EMBL.org in the @borklab.bsky.social.
💻🧬 Using data science to analyze big bio-data.
🇪🇺 Part of the @embltrec.bsky.social expedition and interested in 🦠 (metaG)
This study was co-led by @jonas-biosky.social (@borklab.bsky.social @embl.org) and Dominic Eriksson (@ethz.ch). Big thanks to all co-authors, especially Peer Bork and our collaborators, particularly Meike Vogt, Nicolas Gruber and Shinichi Sunagawa (ETH Zürich). (6/6)
October 15, 2025 at 12:05 PM
Forward looking, the improved understanding of the mechanisms behind LDGs can inform predictions of diversity under climate change scenarios, which might have distinct impacts on the diversity of different microbial lineages. (5/6)
October 15, 2025 at 12:05 PM
LDG variation reflects lineage-specific strategies: Alphaproteobacteria & Cyanobacteriia diversity peak in oligotrophic gyres (nutrient-poor), consistent with their adaptations to low nutrients. Gammaproteobacteria peak outside the gyres, aligning with preferences for copiotrophic conditions. (4/6)
October 15, 2025 at 12:05 PM
LDGs of the surface mixed layer are not uniform: The overall LDG was dominated by species of Cyanobacteriia and Alphaproteobacteria. Other taxonomic groups exhibit a variety of other LDG patterns. (3/6)
October 15, 2025 at 12:05 PM
For the surface ocean, our models suggest higher diversity in winter than in summer. For European latitudes, our results indicate an average 57% richness increase in December, compared to June. We checked coastal time-series studies and found a similar December-June richness difference (54%). (2/6)
October 15, 2025 at 12:05 PM
We found that the ocean mesopelagic layer (200-1,000 m depth) is one of the rare exceptions where LDGs are absent for marine prokaryotes. (1/6)
October 15, 2025 at 12:05 PM
Reposted by Jonas Schiller
We hope many of you will find it useful, and will continue to add data. Here's the preprint: www.biorxiv.org/content/10.1... - hopefully coming soon to a NAR Database Issue near you 😅 Thanks to everyone in the @borklab.bsky.social @embl.org who contributed to this! 7/7
Metalog: curated and harmonised contextual data for global metagenomics samples
Metagenomic sequencing enables the in-depth study of microbes and their functions in humans, animals and the environment. While sequencing data is deposited in public databases, the associated context...
www.biorxiv.org
August 15, 2025 at 8:07 AM