Ioannis Skalidis
@johnskal.bsky.social
MSCA post-doctoral researcher at Förster lab, Utrecht university.
SPA guy trying to navigate Tomo.
Lover of big protein complexes and even bigger scopes.
I'm new here. #structuralbiology #cryoem
SPA guy trying to navigate Tomo.
Lover of big protein complexes and even bigger scopes.
I'm new here. #structuralbiology #cryoem
Thanks Pranav! In the meantime I already set up the pipeline, but still advice is welcome! Any settings you suggest I start with for pytom-tm and then filtering in warp?
October 16, 2025 at 9:13 PM
Thanks Pranav! In the meantime I already set up the pipeline, but still advice is welcome! Any settings you suggest I start with for pytom-tm and then filtering in warp?
If you wanna read a nice resume of the work, here's the LinkedIn post: www.linkedin.com/posts/pkastr...
Direct evidence of acid-driven protein desolvation | Panagiotis Kastritis
Did you know that proteins lose bound waters upon acidification?
We didn't as well. But we visualized this phenomenon in a series of high-resolution cryo-EM structures (~2 Å) across different pH value...
www.linkedin.com
September 2, 2025 at 10:00 AM
If you wanna read a nice resume of the work, here's the LinkedIn post: www.linkedin.com/posts/pkastr...
Thank you very much Andrea!
February 17, 2025 at 9:41 PM
Thank you very much Andrea!
I have a couple of nice visualization snippets for chimerax that I have gathered from here, there, and my own stuff. Would be cool to have somewhere to deposit them!
February 12, 2025 at 10:51 PM
I have a couple of nice visualization snippets for chimerax that I have gathered from here, there, and my own stuff. Would be cool to have somewhere to deposit them!
Oh, forgot to tag @bijvoet-centre.bsky.social where the Structural Biochemistry group is a part of!
February 11, 2025 at 1:02 PM
Oh, forgot to tag @bijvoet-centre.bsky.social where the Structural Biochemistry group is a part of!
Is this infographic true? Did these unis charge 60%+ for overheads????
February 8, 2025 at 12:28 PM
Is this infographic true? Did these unis charge 60%+ for overheads????
EMDB/PDB code is not even necessary, and tbh I never require it. Just send me a chimerax session with everything inside. How hard is that to do?
January 18, 2025 at 4:51 PM
EMDB/PDB code is not even necessary, and tbh I never require it. Just send me a chimerax session with everything inside. How hard is that to do?