Johannes Köster
@johanneskoester.bsky.social
Professor for Bioinformatics and Computational Oncology
University of Duisburg-Essen
Author of Snakemake, founder of Bioconda
University of Duisburg-Essen
Author of Snakemake, founder of Bioconda
This feels pretty huge! The #Snakemake docs now have an LLM powered chatbot (provided for free by @gurubase.bsky.social). It can be seen as a replacement for the normal doc search. This can help a lot, in particular when you are unsure about the keywords to use for a doc search.
April 7, 2025 at 1:36 PM
This feels pretty huge! The #Snakemake docs now have an LLM powered chatbot (provided for free by @gurubase.bsky.social). It can be seen as a replacement for the normal doc search. This can help a lot, in particular when you are unsure about the keywords to use for a doc search.
An exciting first day of the #SnakemakeHackathon2025 at @cern.bsky.social is ending now. I have already merged several pull requests and many very productive teams have formed!
March 10, 2025 at 4:52 PM
An exciting first day of the #SnakemakeHackathon2025 at @cern.bsky.social is ending now. I have already merged several pull requests and many very productive teams have formed!
Sorry, there was a mistake in the example rule. Here is the correct one:
January 8, 2025 at 10:27 AM
Sorry, there was a mistake in the example rule. Here is the correct one:
The latest two #snakemake releases bring lots of little bug fixes and tow major new features:
1. a helper function for deriving sub-paths of input our output files (e.g. to pass a prefix to a command or script)
2. helpers to dynamically access input/output without writing python functions
1. a helper function for deriving sub-paths of input our output files (e.g. to pass a prefix to a command or script)
2. helpers to dynamically access input/output without writing python functions
January 8, 2025 at 10:22 AM
The latest two #snakemake releases bring lots of little bug fixes and tow major new features:
1. a helper function for deriving sub-paths of input our output files (e.g. to pass a prefix to a command or script)
2. helpers to dynamically access input/output without writing python functions
1. a helper function for deriving sub-paths of input our output files (e.g. to pass a prefix to a command or script)
2. helpers to dynamically access input/output without writing python functions