Johannes Hingerl
@johahi.bsky.social
ML for regulatory genomics. PhD student @ Gagneurlab
johahi.github.io
johahi.github.io
Big thanks to co-authors @karollus.bsky.social & @gagneurlab.bsky.social, and the Borzoi authors Johannes Linder, @drkbio.bsky.social et al!
Flashzoi is available on github and on pip: github.com/johahi/borzo...
Flashzoi is available on github and on pip: github.com/johahi/borzo...
GitHub - johahi/borzoi-pytorch: Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement. - johahi/borzoi-pytorch
github.com
October 13, 2025 at 11:53 AM
Big thanks to co-authors @karollus.bsky.social & @gagneurlab.bsky.social, and the Borzoi authors Johannes Linder, @drkbio.bsky.social et al!
Flashzoi is available on github and on pip: github.com/johahi/borzo...
Flashzoi is available on github and on pip: github.com/johahi/borzo...
The speedup does not come at the cost of accuracy:
Flashzoi matches or improves upon Borzoi’s performance across benchmarks, including RNA-seq coverage prediction, variant effect prediction (GTEx eQTLs), and enhancer-gene linking.
Flashzoi matches or improves upon Borzoi’s performance across benchmarks, including RNA-seq coverage prediction, variant effect prediction (GTEx eQTLs), and enhancer-gene linking.
October 13, 2025 at 11:53 AM
The speedup does not come at the cost of accuracy:
Flashzoi matches or improves upon Borzoi’s performance across benchmarks, including RNA-seq coverage prediction, variant effect prediction (GTEx eQTLs), and enhancer-gene linking.
Flashzoi matches or improves upon Borzoi’s performance across benchmarks, including RNA-seq coverage prediction, variant effect prediction (GTEx eQTLs), and enhancer-gene linking.