Jeremy Goecks
@jgoecks.bsky.social
Assistant Center Director, Research Informatics
Associate Member, Department of Machine Learning
Moffitt Cancer Center
Associate Member, Department of Machine Learning
Moffitt Cancer Center
Reposted by Jeremy Goecks
⏳ Only 1 Week Left to Register for ACC2025! Register before August 19 to come to Nashville on Sep 3–5! bit.ly/anvil2025
🔵 Full (in-person): $75 🔵 Student (in-person): $25 🔵 Virtual: free
And don't forget to submit an abstract for a poster or talk by this Friday, August 15! bit.ly/acc2025-abst...
🔵 Full (in-person): $75 🔵 Student (in-person): $25 🔵 Virtual: free
And don't forget to submit an abstract for a poster or talk by this Friday, August 15! bit.ly/acc2025-abst...
AnVIL Community Conference 2025: Abstract Submission Form
Please use this form to submit an abstract (300 word limit) to the AnVIL Community Conference 2025 in Nashville, TN. The conference will take place from September 3-5, 2025. In-person attendance is…
bit.ly
August 12, 2025 at 4:28 PM
⏳ Only 1 Week Left to Register for ACC2025! Register before August 19 to come to Nashville on Sep 3–5! bit.ly/anvil2025
🔵 Full (in-person): $75 🔵 Student (in-person): $25 🔵 Virtual: free
And don't forget to submit an abstract for a poster or talk by this Friday, August 15! bit.ly/acc2025-abst...
🔵 Full (in-person): $75 🔵 Student (in-person): $25 🔵 Virtual: free
And don't forget to submit an abstract for a poster or talk by this Friday, August 15! bit.ly/acc2025-abst...
Please consider joining us for this exciting workshop on machine learning in cancer research and patient care. We have great keynote speakers and opportunities to present your work! Registration link: www.moffitt.org/research-sci...
Dr. Robert Gillies Machine Learning Workshop
The 2025 Dr. Robert Gillies Machine Learning Workshop in Cancer will be tentatively held on Oct. 30 and 31. The meeting will cover the latest advances in AI/ML and their application in cancer.
www.moffitt.org
August 7, 2025 at 8:14 PM
Please consider joining us for this exciting workshop on machine learning in cancer research and patient care. We have great keynote speakers and opportunities to present your work! Registration link: www.moffitt.org/research-sci...
The AnVIL platform is a fantastic data and computing resource for human omics research! Come join us to learn about how others are using AnVIL and how you can start using AnVIL too.
🚨 Registration is OPEN for #AnVILCommunity2025 Conference! Join us in Nashville, Sept 3-5 for talks, posters, & CoFest!
- Regular rate ($75): bit.ly/acc2025-register
- Student rate ($25): bit.ly/acc2025-register-student
- Virtual (free!): bit.ly/acc2025-register-virtual
Don’t miss it!
- Regular rate ($75): bit.ly/acc2025-register
- Student rate ($25): bit.ly/acc2025-register-student
- Virtual (free!): bit.ly/acc2025-register-virtual
Don’t miss it!
July 11, 2025 at 4:17 PM
The AnVIL platform is a fantastic data and computing resource for human omics research! Come join us to learn about how others are using AnVIL and how you can start using AnVIL too.
Reposted by Jeremy Goecks
🚨 Registration is OPEN for #AnVILCommunity2025 Conference! Join us in Nashville, Sept 3-5 for talks, posters, & CoFest!
- Regular rate ($75): bit.ly/acc2025-register
- Student rate ($25): bit.ly/acc2025-register-student
- Virtual (free!): bit.ly/acc2025-register-virtual
Don’t miss it!
- Regular rate ($75): bit.ly/acc2025-register
- Student rate ($25): bit.ly/acc2025-register-student
- Virtual (free!): bit.ly/acc2025-register-virtual
Don’t miss it!
July 10, 2025 at 8:28 PM
🚨 Registration is OPEN for #AnVILCommunity2025 Conference! Join us in Nashville, Sept 3-5 for talks, posters, & CoFest!
- Regular rate ($75): bit.ly/acc2025-register
- Student rate ($25): bit.ly/acc2025-register-student
- Virtual (free!): bit.ly/acc2025-register-virtual
Don’t miss it!
- Regular rate ($75): bit.ly/acc2025-register
- Student rate ($25): bit.ly/acc2025-register-student
- Virtual (free!): bit.ly/acc2025-register-virtual
Don’t miss it!
Ph.D. students—here's a great opportunity to present your research and learn about postdoctoral research opportunities at @moffittnews.bsky.social We have faculty doing high-impact basic, quantitative, and public health cancer science. Come visit and learn more! www.moffitt.org/miot
June 22, 2025 at 6:56 PM
Ph.D. students—here's a great opportunity to present your research and learn about postdoctoral research opportunities at @moffittnews.bsky.social We have faculty doing high-impact basic, quantitative, and public health cancer science. Come visit and learn more! www.moffitt.org/miot
Our lab is extremely proud that Katie is being recognized for her outstanding work! Her use of machine learning to understand T cell biology in pancreatic cancer and predict cancer response to immunotherapy is highly innovative and impactful. Congratulations Katie!
Congratulations to Dr. Katie Blise on being awarded the Sigma Xi Outstanding Researcher Award for her work in the biomedical sciences!
Dr. Blise's research uses computational approaches to better understand relationships between cancer biology and clinical outcomes.
Dr. Blise's research uses computational approaches to better understand relationships between cancer biology and clinical outcomes.
June 6, 2025 at 2:59 PM
Our lab is extremely proud that Katie is being recognized for her outstanding work! Her use of machine learning to understand T cell biology in pancreatic cancer and predict cancer response to immunotherapy is highly innovative and impactful. Congratulations Katie!
Reposted by Jeremy Goecks
💻 Workshops at GBCC2025 are where research meets hands-on power.
Build workflows, fix AI errors, explore spatial omics, automate your lab, analyze microbiomes, and so much more.
💥 10+ in-depth sessions, zero fluff.
🧠 What will you master this June?
👉 gbcc2025.bioconductor.org/program/glan...
Build workflows, fix AI errors, explore spatial omics, automate your lab, analyze microbiomes, and so much more.
💥 10+ in-depth sessions, zero fluff.
🧠 What will you master this June?
👉 gbcc2025.bioconductor.org/program/glan...
Program at a Glance
gbcc2025.bioconductor.org
May 28, 2025 at 2:45 PM
💻 Workshops at GBCC2025 are where research meets hands-on power.
Build workflows, fix AI errors, explore spatial omics, automate your lab, analyze microbiomes, and so much more.
💥 10+ in-depth sessions, zero fluff.
🧠 What will you master this June?
👉 gbcc2025.bioconductor.org/program/glan...
Build workflows, fix AI errors, explore spatial omics, automate your lab, analyze microbiomes, and so much more.
💥 10+ in-depth sessions, zero fluff.
🧠 What will you master this June?
👉 gbcc2025.bioconductor.org/program/glan...
Very excited to share our new
@natcomms.nature.com paper describing machine learning methods for predicting single-cell protein abundance levels in multiplex tissue imaging rdcu.be/em5mR 1/🧵
@natcomms.nature.com paper describing machine learning methods for predicting single-cell protein abundance levels in multiplex tissue imaging rdcu.be/em5mR 1/🧵
Imputing single-cell protein abundance in multiplex tissue imaging
Nature Communications - Current tools for single-cell spatial omics still face barriers with regard to incomplete molecular profiling, tissue loss, and probe failure. Here, the authors use machine...
rdcu.be
May 22, 2025 at 5:01 PM
Very excited to share our new
@natcomms.nature.com paper describing machine learning methods for predicting single-cell protein abundance levels in multiplex tissue imaging rdcu.be/em5mR 1/🧵
@natcomms.nature.com paper describing machine learning methods for predicting single-cell protein abundance levels in multiplex tissue imaging rdcu.be/em5mR 1/🧵
Reposted by Jeremy Goecks
Three days of collaborative hacking, coffee-fueled brainstorming, and community-powered innovation—Galaxy Imaging is growing, and so are its FAIR tools!
https://galaxyproject.org/news/12-05-2025-galaxy-imaging-hackathon2025/
##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway
https://galaxyproject.org/news/12-05-2025-galaxy-imaging-hackathon2025/
##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway
May 16, 2025 at 11:57 AM
Three days of collaborative hacking, coffee-fueled brainstorming, and community-powered innovation—Galaxy Imaging is growing, and so are its FAIR tools!
https://galaxyproject.org/news/12-05-2025-galaxy-imaging-hackathon2025/
##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway
https://galaxyproject.org/news/12-05-2025-galaxy-imaging-hackathon2025/
##UseGalaxy ##GalaxyProject ##EOSC ##EuroScienceGateway
Reposted by Jeremy Goecks
Save the date! Join us #AnVILCommunityConference2025 on September 4-5, 2025 in Nashville, TN. We’ll start with a Networking Event on the evening of September 3, 2025. Dive into genomic data science and cloud computing with scientific talks, poster sessions, and a collaborative CoFest!
May 1, 2025 at 7:58 PM
Save the date! Join us #AnVILCommunityConference2025 on September 4-5, 2025 in Nashville, TN. We’ll start with a Networking Event on the evening of September 3, 2025. Dive into genomic data science and cloud computing with scientific talks, poster sessions, and a collaborative CoFest!
Reposted by Jeremy Goecks
Ready to explore Machine Learning in bioinformatics?
Join us for GTA2025 (May 12–16) and dive into the ML track, where you’ll learn the fundamentals of ML using Galaxy.
GTA2025 is a free, online event offering tracks for all experience levels.
training.galaxyproject.org/training-mat...
Join us for GTA2025 (May 12–16) and dive into the ML track, where you’ll learn the fundamentals of ML using Galaxy.
GTA2025 is a free, online event offering tracks for all experience levels.
training.galaxyproject.org/training-mat...
Galaxy Training Academy 2025
The Galaxy Training Academy is a self-paced online training event for beginners and advanced learners who want to improve their Galaxy data analysis skills. Over the course of one week, we offer a di...
training.galaxyproject.org
April 23, 2025 at 1:49 PM
Ready to explore Machine Learning in bioinformatics?
Join us for GTA2025 (May 12–16) and dive into the ML track, where you’ll learn the fundamentals of ML using Galaxy.
GTA2025 is a free, online event offering tracks for all experience levels.
training.galaxyproject.org/training-mat...
Join us for GTA2025 (May 12–16) and dive into the ML track, where you’ll learn the fundamentals of ML using Galaxy.
GTA2025 is a free, online event offering tracks for all experience levels.
training.galaxyproject.org/training-mat...
Reposted by Jeremy Goecks
On this day, five years ago, we lost James Taylor. The Galaxy continues, and the JXTX Foundation has enabled numerous students to attend genomic data science meetings. Help us continue by donating here: jxtxfoundation.org/donate/
April 2, 2025 at 1:42 PM
On this day, five years ago, we lost James Taylor. The Galaxy continues, and the JXTX Foundation has enabled numerous students to attend genomic data science meetings. Help us continue by donating here: jxtxfoundation.org/donate/
Reposted by Jeremy Goecks
⏳ Join us at GBCC2025! 🚀
🔹 Early Bird Registration ends March 31: gbcc2025.bioconductor.org/registration...
🔹 Submit abstracts by April 1: gbcc2025.bioconductor.org/abstracts/su...
🔹 Scholarships: gbcc2025.bioconductor.org/sponsorships...
🔹 Sponsorship opps: jxtxfoundation.org/news/2025-2-...
🔹 Early Bird Registration ends March 31: gbcc2025.bioconductor.org/registration...
🔹 Submit abstracts by April 1: gbcc2025.bioconductor.org/abstracts/su...
🔹 Scholarships: gbcc2025.bioconductor.org/sponsorships...
🔹 Sponsorship opps: jxtxfoundation.org/news/2025-2-...
March 25, 2025 at 1:42 PM
⏳ Join us at GBCC2025! 🚀
🔹 Early Bird Registration ends March 31: gbcc2025.bioconductor.org/registration...
🔹 Submit abstracts by April 1: gbcc2025.bioconductor.org/abstracts/su...
🔹 Scholarships: gbcc2025.bioconductor.org/sponsorships...
🔹 Sponsorship opps: jxtxfoundation.org/news/2025-2-...
🔹 Early Bird Registration ends March 31: gbcc2025.bioconductor.org/registration...
🔹 Submit abstracts by April 1: gbcc2025.bioconductor.org/abstracts/su...
🔹 Scholarships: gbcc2025.bioconductor.org/sponsorships...
🔹 Sponsorship opps: jxtxfoundation.org/news/2025-2-...
Reposted by Jeremy Goecks
Reminder: tomorrow (March 26, 1:00 EDT) is a BRC-Analytics/Galaxy webinar where we will update you on what's new in Galaxy and BRC-Analytics, including demonstrations of running transcriptomics and surveillance analysis workflows. Zoom link: https://psu.zoom.us/j/93960440173
See (1/2)
See (1/2)
March 25, 2025 at 6:07 PM
Reminder: tomorrow (March 26, 1:00 EDT) is a BRC-Analytics/Galaxy webinar where we will update you on what's new in Galaxy and BRC-Analytics, including demonstrations of running transcriptomics and surveillance analysis workflows. Zoom link: https://psu.zoom.us/j/93960440173
See (1/2)
See (1/2)
Great blog post describing the recent @itcrtraining.bsky.social cancer informatics workshop held at @moffittnews.bsky.social
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR
www.itcrtraining.org/resources/blog
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR
www.itcrtraining.org/resources/blog
ITN - Blog
What's ITN up to?
www.itcrtraining.org
February 17, 2025 at 10:09 PM
Great blog post describing the recent @itcrtraining.bsky.social cancer informatics workshop held at @moffittnews.bsky.social
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR
www.itcrtraining.org/resources/blog
This was a fantastic event with great attendance from the next generation of cancer data scientists! #NCIITCR
www.itcrtraining.org/resources/blog
Reposted by Jeremy Goecks
We are very excited to announce the release of Galaxy 24.2 with several improvements to make to improve your workflow experience and boost productivity. Over the next few weeks, I'll post more details about some of these. Here are a few highlights: (1/4)
February 13, 2025 at 12:51 AM
We are very excited to announce the release of Galaxy 24.2 with several improvements to make to improve your workflow experience and boost productivity. Over the next few weeks, I'll post more details about some of these. Here are a few highlights: (1/4)
Reposted by Jeremy Goecks
Tomorrow is the deadline for applications for JXTX Scholarships for the CSHL Biology of Genomes! The application is lightweight - just a couple brief statements about your work! @cshlmeetings.bsky.social @jxtxfoundation.bsky.social jxtxfoundation.org/news/2025-2-...
JXTX + CSHL 2025 Biology of Genomes Scholarship
JXTX + CSHL 2025 Biology of Genomes Scholarship
jxtxfoundation.org
February 11, 2025 at 9:49 PM
Tomorrow is the deadline for applications for JXTX Scholarships for the CSHL Biology of Genomes! The application is lightweight - just a couple brief statements about your work! @cshlmeetings.bsky.social @jxtxfoundation.bsky.social jxtxfoundation.org/news/2025-2-...
This is the clearest explanation I've read about DeepSeek's advances. Very informative 💯
February 4, 2025 at 1:36 AM
This is the clearest explanation I've read about DeepSeek's advances. Very informative 💯
Reposted by Jeremy Goecks
📝 New blog post Released!
https://galaxyproject.org/news/24-01-2025-27001-certification/
TÜV SÜD: https://www.tuvsud.com has recertified the University of Freiburg the international certification for information security management systems (ISMS: (1/5)
https://galaxyproject.org/news/24-01-2025-27001-certification/
TÜV SÜD: https://www.tuvsud.com has recertified the University of Freiburg the international certification for information security management systems (ISMS: (1/5)
February 4, 2025 at 1:12 AM
📝 New blog post Released!
https://galaxyproject.org/news/24-01-2025-27001-certification/
TÜV SÜD: https://www.tuvsud.com has recertified the University of Freiburg the international certification for information security management systems (ISMS: (1/5)
https://galaxyproject.org/news/24-01-2025-27001-certification/
TÜV SÜD: https://www.tuvsud.com has recertified the University of Freiburg the international certification for information security management systems (ISMS: (1/5)
We have an exciting opening in our @MoffittNews research laboratory for a machine learning engineer! Join us to help shape the future of AI-based cancer research and patient care moffitt-cancer-center-careers.hctsportals.com/jobs/1975214...
Research Software Engineer in Tampa, FL - Moffitt Cancer Center CareersResearch Software Engineer in Tampa, FL - Moffitt Cancer Center Careers
Working at Moffitt Cancer Center is both a career and a mission. All employees are dedicated to patient care, research and education to advance our fight against this disease.
moffitt-cancer-center-careers.hctsportals.com
January 26, 2025 at 4:58 PM
We have an exciting opening in our @MoffittNews research laboratory for a machine learning engineer! Join us to help shape the future of AI-based cancer research and patient care moffitt-cancer-center-careers.hctsportals.com/jobs/1975214...
Here's a fantastic opportunity to present your research and learn about postdoctoral fellowships at the Moffitt Cancer Center! Come visit us and learn about how you can contribute to our transformative research programs, clinical trials, and patient care. moffitt.org/miot
January 26, 2025 at 4:57 PM
Here's a fantastic opportunity to present your research and learn about postdoctoral fellowships at the Moffitt Cancer Center! Come visit us and learn about how you can contribute to our transformative research programs, clinical trials, and patient care. moffitt.org/miot
Reposted by Jeremy Goecks
Galaxy had a strong presence at the Biological Data Science 2024 conference, featured in talks and posters demonstrating its role in advancing accessible and reproducible science. Thank you to all the contributors for helping Galaxy shine!
🗞️Explore the highlights: galaxyproject.org/news/2024-11...
🗞️Explore the highlights: galaxyproject.org/news/2024-11...
Biological Data Science 2024
Galaxy had a strong presence at Biological Data Science 2024, featured in talks and posters that showcased its power and versatility in advancing biological research.
galaxyproject.org
December 2, 2024 at 8:15 PM
Galaxy had a strong presence at the Biological Data Science 2024 conference, featured in talks and posters demonstrating its role in advancing accessible and reproducible science. Thank you to all the contributors for helping Galaxy shine!
🗞️Explore the highlights: galaxyproject.org/news/2024-11...
🗞️Explore the highlights: galaxyproject.org/news/2024-11...
Reposted by Jeremy Goecks
Here is a #compbio starter kit! go.bsky.app/QVPoZXp To all the #Bioinformatics #Genomics #MachineLearning folks: please RP and let’s build this together!
November 23, 2024 at 4:17 AM
Here is a #compbio starter kit! go.bsky.app/QVPoZXp To all the #Bioinformatics #Genomics #MachineLearning folks: please RP and let’s build this together!