James Krieger
jameskrieger.bsky.social
James Krieger
@jameskrieger.bsky.social
Senior data scientist in computational structural biology, protein dynamics and cryoem | Marie Sklododowska-Curie fellow w Jose Maria Carazo and Carlos Oscar Sorzano | postdoc w Ivet Bahar
Do you think this could work for small domains on larger proteins/complexes?
September 13, 2025 at 7:28 AM
4/4
A big thanks to Jose Maria Carazo and Carlos Oscar Sorzano for their amazing guidance and support throughout this project and my Marie Curie fellowship generally

And thanks to MRC LMB scientific computing and funders MRC, Horizon EU and CSIC
July 2, 2025 at 6:36 AM
3/4
Thanks and congratulations to all authors: Aditya Pokharna, Imogen Stockwell, Josip Ivica, Bishal Singh, Johannes Schwab, Carlos Vega-Gutierrez, Ondrej Cais, Beatriz Herguedas, and Ingo Greger
July 2, 2025 at 6:34 AM
2/4
We used a combination of Cryo-EM and simulations, including classical MD and metadynamics, along with electrophysiology for kinetics and synaptic targeting
July 2, 2025 at 6:33 AM
Some amino acid changes can happen with just one nucleotide change but not all of them. A 2-nucleotide mutation is one where 2 nucleotides of the three encoding that amino acid undergo changes and that’s rarer
May 6, 2025 at 10:39 AM
I imagine we could have a mechanism of having pull requests that get reviewed?
January 25, 2025 at 10:13 AM
It’s fine to discuss things in a constructive way. The comment of yours that I contradicted is the one where you said people don’t care
January 20, 2025 at 9:31 AM
We are the scientists/professionals talking to each other. If you don’t care then don’t follow us.
January 20, 2025 at 9:23 AM
Where does the specificity for cancer cells come from?
December 28, 2024 at 3:36 PM
Reposted by James Krieger
(3) This paper is now out for review again (woo!); if you have read this and received it to review - please consider writing your review in light of our response to reviewers!
November 10, 2024 at 2:19 PM
Reposted by James Krieger
(2) Further, @fraserlab.bsky.social conducted a great public peer review of this (thanks Daphne, CJ, and Jamie)! We want to respond to their comments, as well as some replies to our original reviewers. This response-to-reviewers can be found here: www.dropbox.com/scl/fi/v5iqy...
November 10, 2024 at 2:19 PM
There are definitely automated solutions. Andreas Engel, Luca Rima and Thomas Braun have an interesting one that was described in www.pnas.org/doi/full/10.... from 2019 and probably better now. It uses a UV cleavable linker to elute from the beads and is all coupled into a robotic system
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
www.pnas.org
December 4, 2024 at 11:27 PM
Can I be included please
November 24, 2024 at 7:26 PM
How do we use these? It doesn’t work for me
November 17, 2024 at 7:55 PM
Thank you!
October 2, 2023 at 3:54 PM