ilastik-team.bsky.social
@ilastik-team.bsky.social
Anna Kreshuk's lab and the team behind ilastik write here about their latest research in machine learning for microscopy. Also, new ilastik features and releases get announced here! @EMBL
The first meeting was a blast and the second one promises to be even better - if you submit your abstract and join us!
Join us for the second edition of 'AI and biology'! 🤖🧬
Explore how AI transforms biological research – from foundation models for biology to generative modelling.
10 – 13 March 2026
EMBL Heidelberg and Virtual
Submit your abstract by 2 Dec: s.embl.org/ees26-02-bl
#EESAIBio #AI
Explore how AI transforms biological research – from foundation models for biology to generative modelling.
10 – 13 March 2026
EMBL Heidelberg and Virtual
Submit your abstract by 2 Dec: s.embl.org/ees26-02-bl
#EESAIBio #AI
November 18, 2025 at 12:43 PM
The first meeting was a blast and the second one promises to be even better - if you submit your abstract and join us!
Segment large images without tiling artifacts: sharing our work that should have been presented at ICCV in 2 weeks - the brilliant first author Elena can’t go because of visa issues.
The paper: arxiv.org/abs/2503.19545 1/🧵
The paper: arxiv.org/abs/2503.19545 1/🧵
October 9, 2025 at 12:56 PM
Segment large images without tiling artifacts: sharing our work that should have been presented at ICCV in 2 weeks - the brilliant first author Elena can’t go because of visa issues.
The paper: arxiv.org/abs/2503.19545 1/🧵
The paper: arxiv.org/abs/2503.19545 1/🧵
Reposted by ilastik-team.bsky.social
Join EMBL as a research group leader in AI in biology. EMBL AI is our new initiative aiming to exploit the full potential of ML/AI-based approaches to advance our understanding of the most complex system in the known universe - life on Earth.
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
(1/3)
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
(1/3)
September 9, 2025 at 10:07 AM
Join EMBL as a research group leader in AI in biology. EMBL AI is our new initiative aiming to exploit the full potential of ML/AI-based approaches to advance our understanding of the most complex system in the known universe - life on Earth.
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
(1/3)
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
(1/3)
Reposted by ilastik-team.bsky.social
The 2nd AI4Life Challenge is live!
Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail.
📦 Paired noisy/clean datasets
📈 Ground-truth evaluation
🧠 DL focus
Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/
Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail.
📦 Paired noisy/clean datasets
📈 Ground-truth evaluation
🧠 DL focus
Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/
June 27, 2025 at 1:33 PM
The 2nd AI4Life Challenge is live!
Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail.
📦 Paired noisy/clean datasets
📈 Ground-truth evaluation
🧠 DL focus
Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/
Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail.
📦 Paired noisy/clean datasets
📈 Ground-truth evaluation
🧠 DL focus
Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/
Reposted by ilastik-team.bsky.social
🐾 The BioImage Model Zoo just got a major upgrade!
It has been fully redesigned, offering a new backend, model uploader, community curation tools, and integrated browser-based test runs powered by BioEngine. 🧪
Explore now 👉 bioimage.io
It has been fully redesigned, offering a new backend, model uploader, community curation tools, and integrated browser-based test runs powered by BioEngine. 🧪
Explore now 👉 bioimage.io
June 30, 2025 at 1:27 PM
🐾 The BioImage Model Zoo just got a major upgrade!
It has been fully redesigned, offering a new backend, model uploader, community curation tools, and integrated browser-based test runs powered by BioEngine. 🧪
Explore now 👉 bioimage.io
It has been fully redesigned, offering a new backend, model uploader, community curation tools, and integrated browser-based test runs powered by BioEngine. 🧪
Explore now 👉 bioimage.io
Reposted by ilastik-team.bsky.social
Another year, another #BIC Workshop!
This year at #ICCV 2025 in Honolulu, 🌺 🏄♀️ 🍹 🌼
Check it here: www.bioimagecomputing.com
Submission deadline: July 4th
Hey, you have a month left to submit your work!!! 👍
This year at #ICCV 2025 in Honolulu, 🌺 🏄♀️ 🍹 🌼
Check it here: www.bioimagecomputing.com
Submission deadline: July 4th
Hey, you have a month left to submit your work!!! 👍
Another year, another #BIC Workshop!
This year at #ECCV 2024 in Milan, 🇮🇹.
Check it out here: bioimagecomputing.com
Submission Deadline: July 19th
Get your computational work out, we are looking forward to meet you in October!
🍕 🍷 👩🎓 👨🎓 ☀️
This year at #ECCV 2024 in Milan, 🇮🇹.
Check it out here: bioimagecomputing.com
Submission Deadline: July 19th
Get your computational work out, we are looking forward to meet you in October!
🍕 🍷 👩🎓 👨🎓 ☀️
June 4, 2025 at 8:38 PM
Another year, another #BIC Workshop!
This year at #ICCV 2025 in Honolulu, 🌺 🏄♀️ 🍹 🌼
Check it here: www.bioimagecomputing.com
Submission deadline: July 4th
Hey, you have a month left to submit your work!!! 👍
This year at #ICCV 2025 in Honolulu, 🌺 🏄♀️ 🍹 🌼
Check it here: www.bioimagecomputing.com
Submission deadline: July 4th
Hey, you have a month left to submit your work!!! 👍
New stable ilastik version 1.4.1 at www.ilastik.org/download!
Release Highlights:
- Support for OME-zarr (v0.4)
- New workflow - Trainable Domain Adaptation
- New object features based on Spherical Harmonics Feature, contributed by @grosoane.bsky.social.
- Native support for Apple Silicon
Release Highlights:
- Support for OME-zarr (v0.4)
- New workflow - Trainable Domain Adaptation
- New object features based on Spherical Harmonics Feature, contributed by @grosoane.bsky.social.
- Native support for Apple Silicon
ilastik - Download
www.ilastik.org
May 16, 2025 at 10:45 AM
New stable ilastik version 1.4.1 at www.ilastik.org/download!
Release Highlights:
- Support for OME-zarr (v0.4)
- New workflow - Trainable Domain Adaptation
- New object features based on Spherical Harmonics Feature, contributed by @grosoane.bsky.social.
- Native support for Apple Silicon
Release Highlights:
- Support for OME-zarr (v0.4)
- New workflow - Trainable Domain Adaptation
- New object features based on Spherical Harmonics Feature, contributed by @grosoane.bsky.social.
- Native support for Apple Silicon
Reposted by ilastik-team.bsky.social
April 4, 2025 at 8:36 AM
Reposted by ilastik-team.bsky.social
Big news for AI4Life! Our project is a success story by the European Commission! 🇪🇺
The Directorate-General for Research and Innovation (DG RTD) highlights our mission of making AI-powered bioimage analysis accessible to researchers everywhere 🌍
Read more: ai4life.eurobioimaging.eu/ai4life-high...
The Directorate-General for Research and Innovation (DG RTD) highlights our mission of making AI-powered bioimage analysis accessible to researchers everywhere 🌍
Read more: ai4life.eurobioimaging.eu/ai4life-high...
March 12, 2025 at 10:51 AM
Big news for AI4Life! Our project is a success story by the European Commission! 🇪🇺
The Directorate-General for Research and Innovation (DG RTD) highlights our mission of making AI-powered bioimage analysis accessible to researchers everywhere 🌍
Read more: ai4life.eurobioimaging.eu/ai4life-high...
The Directorate-General for Research and Innovation (DG RTD) highlights our mission of making AI-powered bioimage analysis accessible to researchers everywhere 🌍
Read more: ai4life.eurobioimaging.eu/ai4life-high...
If you have talented students in your team looking for a coding-heavy summer project, let them know that ilastik is participating in Google Summer of Code 2025! We are a sub-org under the Python Software Foundation. Come code with us as a (paid!) open source internship: github.com/btbest/gsoc-...
github.com
March 13, 2025 at 10:42 AM
If you have talented students in your team looking for a coding-heavy summer project, let them know that ilastik is participating in Google Summer of Code 2025! We are a sub-org under the Python Software Foundation. Come code with us as a (paid!) open source internship: github.com/btbest/gsoc-...
Look at these beautiful new object features, now available in ilastik! Big thanks to Oane @grosoane.bsky.social for bringing them to all our users!
Now out in PLOS CB: Spherical Texture extraction! doi.org/10.1371/jour...
This method quantifies the intensity distribution in microscopy objects, and is implemented parameter-free in @ilastik-team.bsky.social object classification!
We show applications in cells, C. elegans and Drosophila! 😁
This method quantifies the intensity distribution in microscopy objects, and is implemented parameter-free in @ilastik-team.bsky.social object classification!
We show applications in cells, C. elegans and Drosophila! 😁
February 2, 2025 at 9:03 PM
Look at these beautiful new object features, now available in ilastik! Big thanks to Oane @grosoane.bsky.social for bringing them to all our users!
A new format to ask all you ever wanted to ask about ilastik:
Call 4 Help Pilot Event by GloBIAS, 22 Jan–5 Feb 2025! Offering life scientists a chance for hands-on guidance & support for #bioimage_analysis using Napari, Ilastik & CellProfiler.
💡 Details: www.globias.org/activities/c...
🔗 Sign up! Application until Friday 17 Jan: forms.gle/7hsJgramrFXB...
💡 Details: www.globias.org/activities/c...
🔗 Sign up! Application until Friday 17 Jan: forms.gle/7hsJgramrFXB...
https://forms.gle/7hsJgramrFXBzCjk6]
January 15, 2025 at 9:36 PM
A new format to ask all you ever wanted to ask about ilastik:
Hi everyone! Fulfilling our New Year's resolution to finally move away from X, and already finding so many old friends! Stay tuned for our news, everything will be here from now on.
January 6, 2025 at 3:44 PM
Hi everyone! Fulfilling our New Year's resolution to finally move away from X, and already finding so many old friends! Stay tuned for our news, everything will be here from now on.