Harsh Dutta
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hrshdtt.bsky.social
Harsh Dutta
@hrshdtt.bsky.social
PhD candidate @ Basak Lab, cryoEM of Drosophila membrane proteins, NTU Sg

sbasaklab.com
PAE looks like this. The iPTM score is also 0.74, so these helices are really unreliable, and they take up a considerable amount of amino acids in the total sequence.
November 20, 2024 at 7:32 AM
AF3 predictions for a 500 kDa protein without (left) and with (right) a known 40 kDa binding partner. Apparently disordered regions collapsing into low confidence cytosolic helices. Is AF hallucinating these helices?
November 19, 2024 at 1:43 PM
pain, just literal pain
November 15, 2024 at 11:34 AM