Ricardo Henriques
@henriqueslab.bsky.social
@AIOpticalBioLab.bsky.social. Group Leader #ITQB & H. Prof #UCL. #Nanoscopy & #AI for #LifeSciences. #SRRF sensei. #ERCCoG, #EMBO member. Dad. Opinions my own
- henriqueslab.org -
- henriqueslab.org -
Pinned
🦠🔬🤖🧑💻 #mAIcrobe interface preview, a platform for #DeepLearning enabled bacterial image-based phenotyping. Check it out
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...
Reposted by Ricardo Henriques
🔥 Innovation at #SPAOM2025!
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
November 5, 2025 at 6:13 PM
🔥 Innovation at #SPAOM2025!
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
From Hot Topics in #Bioimage Analysis & #AI 🤖🔬 to Industry Talks & Pitches, today’s sessions showed how science and technology unite to transform #imaging and discovery!
Thanks to all speakers, sponsors & participants for the inspiring discussions 🙌✨
#Microscopy #SPAOM
Reposted by Ricardo Henriques
@spaommeeting.bsky.social has started already 🌟 it's amazing seeing some colleagues again and feeling our vibrating local community 🤩 Day I started strong with neurosciences, AI, image quality assessment, pathology, live cell imaging and all the incredible workshops!
November 5, 2025 at 4:37 PM
@spaommeeting.bsky.social has started already 🌟 it's amazing seeing some colleagues again and feeling our vibrating local community 🤩 Day I started strong with neurosciences, AI, image quality assessment, pathology, live cell imaging and all the incredible workshops!
Reposted by Ricardo Henriques
🎉 Highlights from #SPAOM2025!
From cutting-edge sessions on #AI & Smart #Microscopy 🔬🤖 to our lightning-fast flash talks ⚡, today’s speakers shared brilliant ideas driving the future of imaging and discovery!
Huge thanks to all presenters for the inspiring insights and energy 🙌
From cutting-edge sessions on #AI & Smart #Microscopy 🔬🤖 to our lightning-fast flash talks ⚡, today’s speakers shared brilliant ideas driving the future of imaging and discovery!
Huge thanks to all presenters for the inspiring insights and energy 🙌
November 6, 2025 at 1:38 PM
🎉 Highlights from #SPAOM2025!
From cutting-edge sessions on #AI & Smart #Microscopy 🔬🤖 to our lightning-fast flash talks ⚡, today’s speakers shared brilliant ideas driving the future of imaging and discovery!
Huge thanks to all presenters for the inspiring insights and energy 🙌
From cutting-edge sessions on #AI & Smart #Microscopy 🔬🤖 to our lightning-fast flash talks ⚡, today’s speakers shared brilliant ideas driving the future of imaging and discovery!
Huge thanks to all presenters for the inspiring insights and energy 🙌
Reposted by Ricardo Henriques
Yesterday at #SPAOM2025: here’s what happened! 🙌
🔬 Quantum #Bioimaging & Sensing
🏢 Industry-sponsored Research Talk (Evident)
🚀 Industry Pitches
Incredible talks, inspiring ideas, and cutting-edge innovation shaping the future of #microscopy!
Huge thanks to our speakers & attendees! 👏
🔬 Quantum #Bioimaging & Sensing
🏢 Industry-sponsored Research Talk (Evident)
🚀 Industry Pitches
Incredible talks, inspiring ideas, and cutting-edge innovation shaping the future of #microscopy!
Huge thanks to our speakers & attendees! 👏
November 7, 2025 at 7:42 AM
Yesterday at #SPAOM2025: here’s what happened! 🙌
🔬 Quantum #Bioimaging & Sensing
🏢 Industry-sponsored Research Talk (Evident)
🚀 Industry Pitches
Incredible talks, inspiring ideas, and cutting-edge innovation shaping the future of #microscopy!
Huge thanks to our speakers & attendees! 👏
🔬 Quantum #Bioimaging & Sensing
🏢 Industry-sponsored Research Talk (Evident)
🚀 Industry Pitches
Incredible talks, inspiring ideas, and cutting-edge innovation shaping the future of #microscopy!
Huge thanks to our speakers & attendees! 👏
🔬🤖 ICYMI: impressive preprint from @owenlabuob.bsky.social tackling a major bottleneck – how to systematically compare super-resolution microscopy across experiments. Novel ML framework embeds single-molecule data for cross-sample analysis. Integrated with nano-org database✨ doi.org/10.1101/2025...
November 3, 2025 at 5:57 PM
🔬🤖 ICYMI: impressive preprint from @owenlabuob.bsky.social tackling a major bottleneck – how to systematically compare super-resolution microscopy across experiments. Novel ML framework embeds single-molecule data for cross-sample analysis. Integrated with nano-org database✨ doi.org/10.1101/2025...
Reposted by Ricardo Henriques
Our SMLM database is out in Nature Communications: www.nature.com/articles/s41.... It allows you to store, share, analyse and compare SMLM data and, in particular, can tell you how similar your data is to the other data stored on the site, as you might do with a gene sequence for example.
October 9, 2025 at 10:52 AM
Our SMLM database is out in Nature Communications: www.nature.com/articles/s41.... It allows you to store, share, analyse and compare SMLM data and, in particular, can tell you how similar your data is to the other data stored on the site, as you might do with a gene sequence for example.
Reposted by Ricardo Henriques
🚨Our collaboration with @centriolelab.bsky.social & @gautamdey.bsky.social is out today in @cp-cell.bsky.social
We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky #SciComm #SciSky
www.cell.com/cell/fulltex...
We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky #SciComm #SciSky
www.cell.com/cell/fulltex...
October 31, 2025 at 2:42 PM
🚨Our collaboration with @centriolelab.bsky.social & @gautamdey.bsky.social is out today in @cp-cell.bsky.social
We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky #SciComm #SciSky
www.cell.com/cell/fulltex...
We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky #SciComm #SciSky
www.cell.com/cell/fulltex...
Reposted by Ricardo Henriques
What a gem from @dudinlab.bsky.social @gautamdey.bsky.social @centriolelab.bsky.social in Cell! Expansion microscopy atlas of >200 eukaryotes comparing cytoskeletal architectures revealing structures not seen before. Stunning visualisation! Exactly the kind of transformative cell biology we need.
October 31, 2025 at 5:45 PM
What a gem from @dudinlab.bsky.social @gautamdey.bsky.social @centriolelab.bsky.social in Cell! Expansion microscopy atlas of >200 eukaryotes comparing cytoskeletal architectures revealing structures not seen before. Stunning visualisation! Exactly the kind of transformative cell biology we need.
Reposted by Ricardo Henriques
Just in time for the presentation of his PhD work at the 𝗜𝗧𝗤𝗕 𝗡𝗢𝗩𝗔 𝗣𝗵𝗗 𝗠𝗲𝗲𝘁𝗶𝗻𝗴, our researcher António Brito’s paper on #mAIcrobe🦠 has just been released.
Project developed by the research groups of
@pinholab.bsky.social and @henriqueslab.bsky.social
👇Learn more about it in the post below.👇
Project developed by the research groups of
@pinholab.bsky.social and @henriqueslab.bsky.social
👇Learn more about it in the post below.👇
🦠🔬🤖🧑💻 #mAIcrobe interface preview, a platform for #DeepLearning enabled bacterial image-based phenotyping. Check it out
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...
October 29, 2025 at 11:48 AM
Just in time for the presentation of his PhD work at the 𝗜𝗧𝗤𝗕 𝗡𝗢𝗩𝗔 𝗣𝗵𝗗 𝗠𝗲𝗲𝘁𝗶𝗻𝗴, our researcher António Brito’s paper on #mAIcrobe🦠 has just been released.
Project developed by the research groups of
@pinholab.bsky.social and @henriqueslab.bsky.social
👇Learn more about it in the post below.👇
Project developed by the research groups of
@pinholab.bsky.social and @henriqueslab.bsky.social
👇Learn more about it in the post below.👇
Using #LLMs for science👨💻💬? We have a fun tool for you: introducing #folder2md4llms. It converts an entire folder of docs/code/pdfs/pptx into a single markdown file that you can upload to your chatbot of choice. We use it to talk with our publications database or code repos
github.com/HenriquesLab...
github.com/HenriquesLab...
October 28, 2025 at 5:22 PM
Using #LLMs for science👨💻💬? We have a fun tool for you: introducing #folder2md4llms. It converts an entire folder of docs/code/pdfs/pptx into a single markdown file that you can upload to your chatbot of choice. We use it to talk with our publications database or code repos
github.com/HenriquesLab...
github.com/HenriquesLab...
🦠🔬🤖🧑💻 #mAIcrobe interface preview, a platform for #DeepLearning enabled bacterial image-based phenotyping. Check it out
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...
October 27, 2025 at 12:08 PM
🦠🔬🤖🧑💻 #mAIcrobe interface preview, a platform for #DeepLearning enabled bacterial image-based phenotyping. Check it out
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...
💻: github.com/HenriquesLab...
📄: www.biorxiv.org/content/10.1...
Fun fact, Marvin Minsky, one of the inventors of the confocal, is also one of the early pioneers of AI
en.wikipedia.org/wiki/Marvin_...
en.wikipedia.org/wiki/Marvin_...
Marvin Minsky - Wikipedia
en.wikipedia.org
October 25, 2025 at 9:03 AM
Fun fact, Marvin Minsky, one of the inventors of the confocal, is also one of the early pioneers of AI
en.wikipedia.org/wiki/Marvin_...
en.wikipedia.org/wiki/Marvin_...
Cool news about #RxivMaker. Adding lots of new features 🏃. An rxiv-markdown manuscript can now have embedded code that helps keep all your data updated (e.g. inserting number of samples by reading data like .xls). Both #RxivMaker and #mAIcrobe preprints are written with it
arxiv.org/abs/2508.00836
arxiv.org/abs/2508.00836
October 23, 2025 at 10:26 AM
Cool news about #RxivMaker. Adding lots of new features 🏃. An rxiv-markdown manuscript can now have embedded code that helps keep all your data updated (e.g. inserting number of samples by reading data like .xls). Both #RxivMaker and #mAIcrobe preprints are written with it
arxiv.org/abs/2508.00836
arxiv.org/abs/2508.00836
🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training
📜 www.biorxiv.org/content/10.1...
📜 www.biorxiv.org/content/10.1...
October 22, 2025 at 11:10 AM
🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training
📜 www.biorxiv.org/content/10.1...
📜 www.biorxiv.org/content/10.1...
Reposted by Ricardo Henriques
PhD project available in my lab. Email me with CV if interested
www.findaphd.com/phds/project...
#microsky #bioimaging
www.findaphd.com/phds/project...
#microsky #bioimaging
Using super-resolution microscopy to investigate the mechanistic principles of bacterial cell wall remodelling at University of Warwick on FindAPhD.com
PhD Project - Using super-resolution microscopy to investigate the mechanistic principles of bacterial cell wall remodelling at University of Warwick, listed on FindAPhD.com
www.findaphd.com
October 22, 2025 at 8:29 AM
PhD project available in my lab. Email me with CV if interested
www.findaphd.com/phds/project...
#microsky #bioimaging
www.findaphd.com/phds/project...
#microsky #bioimaging
🚀🔬 Announcing #IMS2026 at @itqbnova.bsky.social! We're assembling a #LifeSciences #Microscopy symposium packed with ✨ speakers and 🧑🔬 workshops. All about imaging cells with photons, electrons and AI! If you love microscopy, you need to be here. Join us on March 19!
ims2026.itqbnovacommunity.org
ims2026.itqbnovacommunity.org
October 21, 2025 at 2:25 PM
🚀🔬 Announcing #IMS2026 at @itqbnova.bsky.social! We're assembling a #LifeSciences #Microscopy symposium packed with ✨ speakers and 🧑🔬 workshops. All about imaging cells with photons, electrons and AI! If you love microscopy, you need to be here. Join us on March 19!
ims2026.itqbnovacommunity.org
ims2026.itqbnovacommunity.org
Reposted by Ricardo Henriques
Thrilled to have @leicamicrosystems.bsky.social as a Gold Sponsor at #SPAOM2025! 🔬💛
Join their exciting workshops:
🧬 Multiplex & Spatial Biology
🧫 Gentle 3D Imaging of Living Tissues
🎙️ Francisco Porto & John Robert Pearson
Dive into 3D imaging breakthroughs!
#Microscopy #SpatialBiology #3DImaging
Join their exciting workshops:
🧬 Multiplex & Spatial Biology
🧫 Gentle 3D Imaging of Living Tissues
🎙️ Francisco Porto & John Robert Pearson
Dive into 3D imaging breakthroughs!
#Microscopy #SpatialBiology #3DImaging
October 14, 2025 at 10:33 AM
Thrilled to have @leicamicrosystems.bsky.social as a Gold Sponsor at #SPAOM2025! 🔬💛
Join their exciting workshops:
🧬 Multiplex & Spatial Biology
🧫 Gentle 3D Imaging of Living Tissues
🎙️ Francisco Porto & John Robert Pearson
Dive into 3D imaging breakthroughs!
#Microscopy #SpatialBiology #3DImaging
Join their exciting workshops:
🧬 Multiplex & Spatial Biology
🧫 Gentle 3D Imaging of Living Tissues
🎙️ Francisco Porto & John Robert Pearson
Dive into 3D imaging breakthroughs!
#Microscopy #SpatialBiology #3DImaging
Reposted by Ricardo Henriques
🌟 Big thanks to Evident Microscopy, our Platinum Sponsor at #SPAOM2025! 🙌🔬
Join their workshops:
🧪 Advancing Confocal Imaging – Björn Sieberer
🌀 IXploreSpinXL: Spinning Disk Confocal – Wojciech Brutkowski
Don't miss these cutting-edge sessions! 🔍✨
#Microscopy #LifeSciences #Evident
Join their workshops:
🧪 Advancing Confocal Imaging – Björn Sieberer
🌀 IXploreSpinXL: Spinning Disk Confocal – Wojciech Brutkowski
Don't miss these cutting-edge sessions! 🔍✨
#Microscopy #LifeSciences #Evident
October 9, 2025 at 12:07 PM
🌟 Big thanks to Evident Microscopy, our Platinum Sponsor at #SPAOM2025! 🙌🔬
Join their workshops:
🧪 Advancing Confocal Imaging – Björn Sieberer
🌀 IXploreSpinXL: Spinning Disk Confocal – Wojciech Brutkowski
Don't miss these cutting-edge sessions! 🔍✨
#Microscopy #LifeSciences #Evident
Join their workshops:
🧪 Advancing Confocal Imaging – Björn Sieberer
🌀 IXploreSpinXL: Spinning Disk Confocal – Wojciech Brutkowski
Don't miss these cutting-edge sessions! 🔍✨
#Microscopy #LifeSciences #Evident
Reposted by Ricardo Henriques
Happy #FluorescenceFriday. Christophe Leterrier⭐in #TheMicroscopists and reflects on the
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...
The Microscopists | Christophe Leterrier (CNRS & Aix-Marseille Université)
This time on The Microscopists, we're joined by Christophe Leterrier, team leader at NeuroCyto in Marseille and director of a Nikon Center of Excellence for super-resolution microscopy.Christophe r...
bit.ly
October 3, 2025 at 1:36 PM
Happy #FluorescenceFriday. Christophe Leterrier⭐in #TheMicroscopists and reflects on the
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...
Reposted by Ricardo Henriques
🌟 Announcing Prof. Arrate Muñoz-Barrutia as a Plenary Speaker at #SPAOM2025!
She’s leading the way in 🧠 AI + 🔬 bioimage analysis to transform how we detect and treat disease.
Don’t miss her in “Hot Topics in Bioimage Analysis and AI” 🤖📊
#Microscopy #AIinScience #LifeSciences #WomenInSTEM
She’s leading the way in 🧠 AI + 🔬 bioimage analysis to transform how we detect and treat disease.
Don’t miss her in “Hot Topics in Bioimage Analysis and AI” 🤖📊
#Microscopy #AIinScience #LifeSciences #WomenInSTEM
October 7, 2025 at 2:51 PM
🌟 Announcing Prof. Arrate Muñoz-Barrutia as a Plenary Speaker at #SPAOM2025!
She’s leading the way in 🧠 AI + 🔬 bioimage analysis to transform how we detect and treat disease.
Don’t miss her in “Hot Topics in Bioimage Analysis and AI” 🤖📊
#Microscopy #AIinScience #LifeSciences #WomenInSTEM
She’s leading the way in 🧠 AI + 🔬 bioimage analysis to transform how we detect and treat disease.
Don’t miss her in “Hot Topics in Bioimage Analysis and AI” 🤖📊
#Microscopy #AIinScience #LifeSciences #WomenInSTEM
Reposted by Ricardo Henriques
🔬 Got new data that’s hot off the microscope?
SPAOM is accepting late-breaking abstracts for poster presentations!
🗓️ Deadline: Oct 13
📍 Present your work at the premier microscopy meeting of the Iberian community.
Submit here ➡️ spaom2025.org/registration/
#SPAOM #Microscopy #CallForAbstracts
SPAOM is accepting late-breaking abstracts for poster presentations!
🗓️ Deadline: Oct 13
📍 Present your work at the premier microscopy meeting of the Iberian community.
Submit here ➡️ spaom2025.org/registration/
#SPAOM #Microscopy #CallForAbstracts
October 6, 2025 at 5:57 PM
🔬 Got new data that’s hot off the microscope?
SPAOM is accepting late-breaking abstracts for poster presentations!
🗓️ Deadline: Oct 13
📍 Present your work at the premier microscopy meeting of the Iberian community.
Submit here ➡️ spaom2025.org/registration/
#SPAOM #Microscopy #CallForAbstracts
SPAOM is accepting late-breaking abstracts for poster presentations!
🗓️ Deadline: Oct 13
📍 Present your work at the premier microscopy meeting of the Iberian community.
Submit here ➡️ spaom2025.org/registration/
#SPAOM #Microscopy #CallForAbstracts
Reposted by Ricardo Henriques
🌟 We’re thrilled to have Esther González-Almela at #SPAOM2025!
She’s a Marie Skłodowska-Curie Fellow at CNB-CSIC, exploring how viruses manipulate nuclear architecture using advanced imaging tools 🔬
Her talk will be one to watch!
#Microscopy #Virology
She’s a Marie Skłodowska-Curie Fellow at CNB-CSIC, exploring how viruses manipulate nuclear architecture using advanced imaging tools 🔬
Her talk will be one to watch!
#Microscopy #Virology
October 3, 2025 at 11:17 AM
🌟 We’re thrilled to have Esther González-Almela at #SPAOM2025!
She’s a Marie Skłodowska-Curie Fellow at CNB-CSIC, exploring how viruses manipulate nuclear architecture using advanced imaging tools 🔬
Her talk will be one to watch!
#Microscopy #Virology
She’s a Marie Skłodowska-Curie Fellow at CNB-CSIC, exploring how viruses manipulate nuclear architecture using advanced imaging tools 🔬
Her talk will be one to watch!
#Microscopy #Virology
Looking for your next adventure? Want to be our colleague? #NIMSB is a new institute in medical systems biology recruiting group leaders.
It's a sister institute to ours (@itqbnova.bsky.social), offering excellent opportunities for collaboration. Come be our scientific neighbours!
It's a sister institute to ours (@itqbnova.bsky.social), offering excellent opportunities for collaboration. Come be our scientific neighbours!
Passionate about #SystemsBiology and ready to lead your own research group?
Join us at the forefront of discovery — apply now to be a #GroupLeader at the NOVA Institute for Medical Systems Biology, in beautiful Lisbon, PT!
Appl. by Oct 8:
www.nature.com/naturecareer...
#ScienceJobs #JobOffer
Join us at the forefront of discovery — apply now to be a #GroupLeader at the NOVA Institute for Medical Systems Biology, in beautiful Lisbon, PT!
Appl. by Oct 8:
www.nature.com/naturecareer...
#ScienceJobs #JobOffer
September 29, 2025 at 10:16 AM
Looking for your next adventure? Want to be our colleague? #NIMSB is a new institute in medical systems biology recruiting group leaders.
It's a sister institute to ours (@itqbnova.bsky.social), offering excellent opportunities for collaboration. Come be our scientific neighbours!
It's a sister institute to ours (@itqbnova.bsky.social), offering excellent opportunities for collaboration. Come be our scientific neighbours!
Reposted by Ricardo Henriques
Passionate about #SystemsBiology and ready to lead your own research group?
Join us at the forefront of discovery — apply now to be a #GroupLeader at the NOVA Institute for Medical Systems Biology, in beautiful Lisbon, PT!
Appl. by Oct 8:
www.nature.com/naturecareer...
#ScienceJobs #JobOffer
Join us at the forefront of discovery — apply now to be a #GroupLeader at the NOVA Institute for Medical Systems Biology, in beautiful Lisbon, PT!
Appl. by Oct 8:
www.nature.com/naturecareer...
#ScienceJobs #JobOffer
September 29, 2025 at 9:52 AM
Passionate about #SystemsBiology and ready to lead your own research group?
Join us at the forefront of discovery — apply now to be a #GroupLeader at the NOVA Institute for Medical Systems Biology, in beautiful Lisbon, PT!
Appl. by Oct 8:
www.nature.com/naturecareer...
#ScienceJobs #JobOffer
Join us at the forefront of discovery — apply now to be a #GroupLeader at the NOVA Institute for Medical Systems Biology, in beautiful Lisbon, PT!
Appl. by Oct 8:
www.nature.com/naturecareer...
#ScienceJobs #JobOffer