Reposted by Geoff Fudenberg
January 16, 2025 at 4:17 PM
in case of use (or if folks in your group would be interested in contributing) we have been developing a Snakemake pipeline that processes fastqs either with or without Spike-in github.com/Fudenberg-Re... -- we've used it to compute FRiPs for cohesin in CTCF peaks to compare with extrusion models
December 3, 2024 at 7:59 PM
in case of use (or if folks in your group would be interested in contributing) we have been developing a Snakemake pipeline that processes fastqs either with or without Spike-in github.com/Fudenberg-Re... -- we've used it to compute FRiPs for cohesin in CTCF peaks to compare with extrusion models