European Nucleotide Archive (ENA)
@enasequence.bsky.social
The European Nucleotide Archive offers open data archiving across species, platforms & applications. A globally comprehensive record & platform for data coordination
ENA is having its annual facilities day event! We kicked off the day getting our guests to break into groups an designing some flags they felt represented their groups!
November 28, 2024 at 1:23 PM
ENA is having its annual facilities day event! We kicked off the day getting our guests to break into groups an designing some flags they felt represented their groups!
Cross-linking life science infrastructures for molecular and taxonomic data together with @WRMarineSpecies, @EukRef, @OBISNetwork and @GBIF. A fantastic, productive @BlueCloudEU workshop in synergy with #H2020 projects @Bicikl_H2020, @EU_AtlantECO and DTO-Bioflow!
November 27, 2024 at 2:49 PM
Cross-linking life science infrastructures for molecular and taxonomic data together with @WRMarineSpecies, @EukRef, @OBISNetwork and @GBIF. A fantastic, productive @BlueCloudEU workshop in synergy with #H2020 projects @Bicikl_H2020, @EU_AtlantECO and DTO-Bioflow!
1/9
This #tweetorial will run you through umbrella studies at the ENA. As you may already know, a study groups together data submitted to the archive and controls its release date. Umbrella studies are study objects in the ENA which provide hierarchical grouping of other studies
This #tweetorial will run you through umbrella studies at the ENA. As you may already know, a study groups together data submitted to the archive and controls its release date. Umbrella studies are study objects in the ENA which provide hierarchical grouping of other studies
November 27, 2024 at 2:49 PM
1/9
This #tweetorial will run you through umbrella studies at the ENA. As you may already know, a study groups together data submitted to the archive and controls its release date. Umbrella studies are study objects in the ENA which provide hierarchical grouping of other studies
This #tweetorial will run you through umbrella studies at the ENA. As you may already know, a study groups together data submitted to the archive and controls its release date. Umbrella studies are study objects in the ENA which provide hierarchical grouping of other studies
Happy New Year from everyone @ENASequence! We’re looking forward to a 2023 filled with open data!
November 27, 2024 at 2:48 PM
Happy New Year from everyone @ENASequence! We’re looking forward to a 2023 filled with open data!
The first cohort study linking data from different categories for SARS-CoV-2 is now available in the Pathogens Portal Cohort Browser. Thanks to @erasmusmcintl for providing the first dataset through the @ReCoDID2 project. https://www.ebi.ac.uk/ena/pathogens/v2/cohorts
November 27, 2024 at 2:45 PM
The first cohort study linking data from different categories for SARS-CoV-2 is now available in the Pathogens Portal Cohort Browser. Thanks to @erasmusmcintl for providing the first dataset through the @ReCoDID2 project. https://www.ebi.ac.uk/ena/pathogens/v2/cohorts
🚨 The latest ENA NAR DB issue paper has been published: https://doi.org/10.1093/nar/gkac1051 🚨 It provides a summary of ENA content and services, an update on our data presentation and submissions systems, and some selected developments from the last year.
November 27, 2024 at 2:45 PM
🚨 The latest ENA NAR DB issue paper has been published: https://doi.org/10.1093/nar/gkac1051 🚨 It provides a summary of ENA content and services, an update on our data presentation and submissions systems, and some selected developments from the last year.
It was great to visit @INMEGEN with some of the @ENASequence team to do some hands on training and talk about open data in Latin America!
November 27, 2024 at 2:45 PM
It was great to visit @INMEGEN with some of the @ENASequence team to do some hands on training and talk about open data in Latin America!
Happy Halloween from the ENA Team!
November 27, 2024 at 2:45 PM
Happy Halloween from the ENA Team!
Join our workshop on 6 November at @iscb-LA SOIBIO BioNetMX. We'll demonstrate real-life examples of open data sharing, its benefits & how to guides. We are committed to training for sustainable, FAIR, & #opendata. Register for the conference to join: https://www.iscb.org/la2022-register
November 27, 2024 at 2:44 PM
Join our workshop on 6 November at @iscb-LA SOIBIO BioNetMX. We'll demonstrate real-life examples of open data sharing, its benefits & how to guides. We are committed to training for sustainable, FAIR, & #opendata. Register for the conference to join: https://www.iscb.org/la2022-register
1/14 Programmatic submissions are completed by preparing your submissions as XML documents and either sending them to ENA using a program such as cURL or using the Webin Portal. This #tweetorial will run you through submission of raw read data using the programmatic route.
November 27, 2024 at 2:44 PM
1/14 Programmatic submissions are completed by preparing your submissions as XML documents and either sending them to ENA using a program such as cURL or using the Webin Portal. This #tweetorial will run you through submission of raw read data using the programmatic route.
Happy #InternationalBeerDay! The hero of which is the humble brewers yeast, Sacchromyces cerevisiae. @ENASequence has over 170,000 sequence records for this species and more than 150,000 raw read data sets open to the public. Small but mighty!
November 27, 2024 at 2:44 PM
Happy #InternationalBeerDay! The hero of which is the humble brewers yeast, Sacchromyces cerevisiae. @ENASequence has over 170,000 sequence records for this species and more than 150,000 raw read data sets open to the public. Small but mighty!
Happy #WorldSnakeDay! 🐍 Did you know that @ENASequence has 25 TeraBases of raw read data archived for the Serpentes suborder? As well as more than a quarter of a million sequence records! Search for the Serpentes tax ID (8570) in the ENA Browser or a specific snake species!
November 27, 2024 at 2:44 PM
Happy #WorldSnakeDay! 🐍 Did you know that @ENASequence has 25 TeraBases of raw read data archived for the Serpentes suborder? As well as more than a quarter of a million sequence records! Search for the Serpentes tax ID (8570) in the ENA Browser or a specific snake species!
50% of voters were right! @ENASequence received on average 17 submissions per minute in the last 12 months. That’s over 25,000 submissions per day! Not even counting all the data we mirror from other INSDC nodes, NCBI and DDBJ!
November 27, 2024 at 2:43 PM
50% of voters were right! @ENASequence received on average 17 submissions per minute in the last 12 months. That’s over 25,000 submissions per day! Not even counting all the data we mirror from other INSDC nodes, NCBI and DDBJ!
1/14
Today’s #tweetorial will focus on interactive submission of raw read sequencing data to ENA. To submit data to ENA you must first register a Webin submission account. Click on the link below to access the Webin portal and register your first account!
https://www.ebi.ac.uk/ena/submit/webin/login
Today’s #tweetorial will focus on interactive submission of raw read sequencing data to ENA. To submit data to ENA you must first register a Webin submission account. Click on the link below to access the Webin portal and register your first account!
https://www.ebi.ac.uk/ena/submit/webin/login
November 27, 2024 at 2:43 PM
1/14
Today’s #tweetorial will focus on interactive submission of raw read sequencing data to ENA. To submit data to ENA you must first register a Webin submission account. Click on the link below to access the Webin portal and register your first account!
https://www.ebi.ac.uk/ena/submit/webin/login
Today’s #tweetorial will focus on interactive submission of raw read sequencing data to ENA. To submit data to ENA you must first register a Webin submission account. Click on the link below to access the Webin portal and register your first account!
https://www.ebi.ac.uk/ena/submit/webin/login
1/11 This week’s #tweetorial will focus on searching the ENA for data through “Advanced Search”. We’ll go through step by step how you might build a query for read data in the ENA. Hopefully you’ll feel able to build your own query afterwards!
November 27, 2024 at 2:43 PM
1/11 This week’s #tweetorial will focus on searching the ENA for data through “Advanced Search”. We’ll go through step by step how you might build a query for read data in the ENA. Hopefully you’ll feel able to build your own query afterwards!
The ENA Advanced Search is a powerful way to search the archive for datasets that meet criteria of interest to you. It can help you build complex search queries, these can be saved and run again. Familiarise yourself with the Advanced Search interface:
https://t.co/cag0YU8dKR
https://t.co/cag0YU8dKR
November 27, 2024 at 2:43 PM
The ENA Advanced Search is a powerful way to search the archive for datasets that meet criteria of interest to you. It can help you build complex search queries, these can be saved and run again. Familiarise yourself with the Advanced Search interface:
https://t.co/cag0YU8dKR
https://t.co/cag0YU8dKR
Programmatic submissions are completed using XML documents and either sending them to ENA using a program such as cURL or using the Webin Portal. Programmatic submissions are beneficial to high volume submitters and is the only route for submitting some object types.
November 27, 2024 at 2:43 PM
Programmatic submissions are completed using XML documents and either sending them to ENA using a program such as cURL or using the Webin Portal. Programmatic submissions are beneficial to high volume submitters and is the only route for submitting some object types.
Webin-CLI submissions use the Webin command line submission interface. This validates your submissions entirely before you complete them, allowing you maximum control of the process. This is a good option for people comfortable with CLIs who wish to submit most data types to us.
November 27, 2024 at 2:42 PM
Webin-CLI submissions use the Webin command line submission interface. This validates your submissions entirely before you complete them, allowing you maximum control of the process. This is a good option for people comfortable with CLIs who wish to submit most data types to us.
Webin Interactive is a user-friendly web based interface with our submission services. This is often the most accessible data submission route. Log into your Webin account using the link below:
https://www.ebi.ac.uk/ena/submit/webin/login.
https://www.ebi.ac.uk/ena/submit/webin/login.
November 27, 2024 at 2:42 PM
Webin Interactive is a user-friendly web based interface with our submission services. This is often the most accessible data submission route. Log into your Webin account using the link below:
https://www.ebi.ac.uk/ena/submit/webin/login.
https://www.ebi.ac.uk/ena/submit/webin/login.
1/8 The ENA would like to introduce you to our very first TWEETORIAL! For this #tweetorial, we will be explaining the ENA Metadata Model. When submitting data to the ENA, you need to register additional metadata so your submission is in accordance with FAIR data principles.
November 27, 2024 at 2:42 PM
1/8 The ENA would like to introduce you to our very first TWEETORIAL! For this #tweetorial, we will be explaining the ENA Metadata Model. When submitting data to the ENA, you need to register additional metadata so your submission is in accordance with FAIR data principles.
Another great ENA Facilities Day: thanks to this year's participants: insights from our power users into how they use ENA and some good steer on our future developments.
November 27, 2024 at 2:39 PM
Another great ENA Facilities Day: thanks to this year's participants: insights from our power users into how they use ENA and some good steer on our future developments.