Dheeraj Prakaash
@dheerajprakaash.bsky.social
Comp #Biophysics #Biochemistry
Multiscale MD #simulations of #biomolecules
Postdoc w/ Dr Tamara Bidone
SCI Institute @utah.edu
Previously:
Postdoc (2022-24) - Khalid group
Uni of Oxford @ox.ac.uk
PhD (2022) - Kalli group
@universityofleeds.bsky.social
Multiscale MD #simulations of #biomolecules
Postdoc w/ Dr Tamara Bidone
SCI Institute @utah.edu
Previously:
Postdoc (2022-24) - Khalid group
Uni of Oxford @ox.ac.uk
PhD (2022) - Kalli group
@universityofleeds.bsky.social
Halloween sightings at the Uni @utah.edu and #SaltLakeCity on the way home..
November 1, 2025 at 4:54 AM
Halloween sightings at the Uni @utah.edu and #SaltLakeCity on the way home..
The #BidoneLab with costumes and scarfaces on for the #compchem #Halloween potluck 🎃🍲 at the Henry Eyring Center (HEC) for Theoretical Chemistry. Thanks to our colleagues at the HEC @utahchemistry.bsky.social for organizing.
November 1, 2025 at 4:51 AM
The #BidoneLab with costumes and scarfaces on for the #compchem #Halloween potluck 🎃🍲 at the Henry Eyring Center (HEC) for Theoretical Chemistry. Thanks to our colleagues at the HEC @utahchemistry.bsky.social for organizing.
Happy to share that I have started as a #postdoc in the #BidoneLab at the Scientific Computing and Imaging Institute @uusci.bsky.social @utah.edu #SaltLakeCity, in collab with #VothGroup at UChicago @uchichemistry.bsky.social
👇🏻Pic of #beautiful #RockyMountains in #Utah from above the #clouds
👇🏻Pic of #beautiful #RockyMountains in #Utah from above the #clouds
October 11, 2025 at 8:34 PM
Happy to share that I have started as a #postdoc in the #BidoneLab at the Scientific Computing and Imaging Institute @uusci.bsky.social @utah.edu #SaltLakeCity, in collab with #VothGroup at UChicago @uchichemistry.bsky.social
👇🏻Pic of #beautiful #RockyMountains in #Utah from above the #clouds
👇🏻Pic of #beautiful #RockyMountains in #Utah from above the #clouds
Happy to inform that I've been accepted into the 11-month virtual postgrad program in #AI & #ML by @caltech.edu in collab with #IBM. Excited to dive into this field & upskill myself.
December 18, 2024 at 7:25 AM
Happy to inform that I've been accepted into the 11-month virtual postgrad program in #AI & #ML by @caltech.edu in collab with #IBM. Excited to dive into this field & upskill myself.
Our paper: "OmpA controls order in the E. coli outer #membrane & shares the mechanical load" is out in
@pnas.org - led by Georgina Benn and Thomas Silhavy. Collab b/w Princeton, NYU, UCL, & @oxfordbiochemistry.bsky.social.
#Simulations by me & @sykhalid.bsky.social
doi.org/10.1073/pnas...
@pnas.org - led by Georgina Benn and Thomas Silhavy. Collab b/w Princeton, NYU, UCL, & @oxfordbiochemistry.bsky.social.
#Simulations by me & @sykhalid.bsky.social
doi.org/10.1073/pnas...
December 5, 2024 at 8:30 AM
Our paper: "OmpA controls order in the E. coli outer #membrane & shares the mechanical load" is out in
@pnas.org - led by Georgina Benn and Thomas Silhavy. Collab b/w Princeton, NYU, UCL, & @oxfordbiochemistry.bsky.social.
#Simulations by me & @sykhalid.bsky.social
doi.org/10.1073/pnas...
@pnas.org - led by Georgina Benn and Thomas Silhavy. Collab b/w Princeton, NYU, UCL, & @oxfordbiochemistry.bsky.social.
#Simulations by me & @sykhalid.bsky.social
doi.org/10.1073/pnas...
Only a matter of time before #MassiveFold powers up⤴️ #protein #structure #prediction & #ProteinDesign #efficiency unlocking #AlphaFold 's true potential🧵
#academicsky #AI #research @alphafold.bsky.social #HPC #parallelization #compchem #compchemsky #Biology #Biochemistry #StructuralBiology #Science
#academicsky #AI #research @alphafold.bsky.social #HPC #parallelization #compchem #compchemsky #Biology #Biochemistry #StructuralBiology #Science
November 27, 2024 at 8:14 AM
Only a matter of time before #MassiveFold powers up⤴️ #protein #structure #prediction & #ProteinDesign #efficiency unlocking #AlphaFold 's true potential🧵
#academicsky #AI #research @alphafold.bsky.social #HPC #parallelization #compchem #compchemsky #Biology #Biochemistry #StructuralBiology #Science
#academicsky #AI #research @alphafold.bsky.social #HPC #parallelization #compchem #compchemsky #Biology #Biochemistry #StructuralBiology #Science
A #photograph of a #spider and its #vibrant super-silky web that I clicked with my flashlight on. Can't get enough of #Nature 's #beauty 🌈
#photography #samsung #smartphone #glowing #rainbow #spiderweb #wildlife #art #halloween #night #wild
#photography #samsung #smartphone #glowing #rainbow #spiderweb #wildlife #art #halloween #night #wild
November 24, 2024 at 8:53 AM
A #photograph of a #spider and its #vibrant super-silky web that I clicked with my flashlight on. Can't get enough of #Nature 's #beauty 🌈
#photography #samsung #smartphone #glowing #rainbow #spiderweb #wildlife #art #halloween #night #wild
#photography #samsung #smartphone #glowing #rainbow #spiderweb #wildlife #art #halloween #night #wild
#Aquaporin 7 acts as a junction protein. Made with #ProteinImager @proteinimaging.bsky.social & #Inkscape.
Beautiful #cryo-EM structure (2.55 Å) by Huang et al., 2023. PDB: 8AMW.
Beautiful #cryo-EM structure (2.55 Å) by Huang et al., 2023. PDB: 8AMW.
November 22, 2024 at 11:36 PM
#Aquaporin 7 acts as a junction protein. Made with #ProteinImager @proteinimaging.bsky.social & #Inkscape.
Beautiful #cryo-EM structure (2.55 Å) by Huang et al., 2023. PDB: 8AMW.
Beautiful #cryo-EM structure (2.55 Å) by Huang et al., 2023. PDB: 8AMW.
The #kinase domain (PDB: 3LCK) of the #Src family #lymphocyte tyrosine kinase- #Lck in #T-cells. #Blender3d.
My #PhD paper @universityofleeds.bsky.social - Mol dynamics & #lipid interactions of the full-length Lck: www.nature.com/articles/s41...
My #PhD paper @universityofleeds.bsky.social - Mol dynamics & #lipid interactions of the full-length Lck: www.nature.com/articles/s41...
November 22, 2024 at 11:36 PM
The #kinase domain (PDB: 3LCK) of the #Src family #lymphocyte tyrosine kinase- #Lck in #T-cells. #Blender3d.
My #PhD paper @universityofleeds.bsky.social - Mol dynamics & #lipid interactions of the full-length Lck: www.nature.com/articles/s41...
My #PhD paper @universityofleeds.bsky.social - Mol dynamics & #lipid interactions of the full-length Lck: www.nature.com/articles/s41...
#E.coli outer membrane protein armour. #DigitalArt with #Inkscape. #Molecular images #rendered with #VMD. #Simulations in #GROMACS (with #Archer2 #HPC, #HecBioSim). #Research led by Melissa Webby & Colin Kleanthous (Dept of Biochemistry @universityofoxford.bsky.social): doi.org/10.1126/scia...
November 22, 2024 at 11:36 PM
#E.coli outer membrane protein armour. #DigitalArt with #Inkscape. #Molecular images #rendered with #VMD. #Simulations in #GROMACS (with #Archer2 #HPC, #HecBioSim). #Research led by Melissa Webby & Colin Kleanthous (Dept of Biochemistry @universityofoxford.bsky.social): doi.org/10.1126/scia...
S1P🟡 transport by SPNS2🟢 & SPNS2-PIP2⚪ lipid interactions. #Rendered in #VMD. #Simulations in #GROMACS (with #Archer2 #HPC, #HECBioSim). #Research led by Haiping Tang & Carol V. Robinson at the Dept of Biochemistry @universityofoxford.bsky.social: doi.org/10.1016/j.mo...
November 22, 2024 at 11:36 PM
S1P🟡 transport by SPNS2🟢 & SPNS2-PIP2⚪ lipid interactions. #Rendered in #VMD. #Simulations in #GROMACS (with #Archer2 #HPC, #HECBioSim). #Research led by Haiping Tang & Carol V. Robinson at the Dept of Biochemistry @universityofoxford.bsky.social: doi.org/10.1016/j.mo...
Seems like I haven't yet mentioned that-
I enjoy #SciArt #SciComm #SciViz #illustration. (Thread🧵)
Inspired by and thanks to @rafeequemavoor.bsky.social @bradyajohnston.bsky.social @verenaresch.bsky.social @sarahjpiper.bsky.social for #Blender3d lessons.
#CompBio #CompChem #CompChemSky
I enjoy #SciArt #SciComm #SciViz #illustration. (Thread🧵)
Inspired by and thanks to @rafeequemavoor.bsky.social @bradyajohnston.bsky.social @verenaresch.bsky.social @sarahjpiper.bsky.social for #Blender3d lessons.
#CompBio #CompChem #CompChemSky
November 22, 2024 at 11:36 PM
Seems like I haven't yet mentioned that-
I enjoy #SciArt #SciComm #SciViz #illustration. (Thread🧵)
Inspired by and thanks to @rafeequemavoor.bsky.social @bradyajohnston.bsky.social @verenaresch.bsky.social @sarahjpiper.bsky.social for #Blender3d lessons.
#CompBio #CompChem #CompChemSky
I enjoy #SciArt #SciComm #SciViz #illustration. (Thread🧵)
Inspired by and thanks to @rafeequemavoor.bsky.social @bradyajohnston.bsky.social @verenaresch.bsky.social @sarahjpiper.bsky.social for #Blender3d lessons.
#CompBio #CompChem #CompChemSky
November 22, 2024 at 9:34 PM
Hi all! Excited to explore, share & connect under the #BlueSky
I completed my 1st postdoc w/ @sykhalid.bsky.social @ Oxford. Currently on the US job market to do another #postdoc. Interests: #compchem, #proteins, #membranes, multi-scale MD #simulations
I'm into sports, hikes, dogs, motorbikes👇🏻 :)
I completed my 1st postdoc w/ @sykhalid.bsky.social @ Oxford. Currently on the US job market to do another #postdoc. Interests: #compchem, #proteins, #membranes, multi-scale MD #simulations
I'm into sports, hikes, dogs, motorbikes👇🏻 :)
November 18, 2024 at 9:44 AM
Hi all! Excited to explore, share & connect under the #BlueSky
I completed my 1st postdoc w/ @sykhalid.bsky.social @ Oxford. Currently on the US job market to do another #postdoc. Interests: #compchem, #proteins, #membranes, multi-scale MD #simulations
I'm into sports, hikes, dogs, motorbikes👇🏻 :)
I completed my 1st postdoc w/ @sykhalid.bsky.social @ Oxford. Currently on the US job market to do another #postdoc. Interests: #compchem, #proteins, #membranes, multi-scale MD #simulations
I'm into sports, hikes, dogs, motorbikes👇🏻 :)