Community competitions help benchmark approaches in computational biology. Struck et al. now present GHIST 2024 - The First Genomic History Inference Strategies Tournament, for the inference of evolutionary history from genome data.
🔗 doi.org/10.1093/molbev/msaf257
#evobio #molbio #compbio #popgen
🔗 doi.org/10.1093/molbev/msaf257
#evobio #molbio #compbio #popgen
November 6, 2025 at 3:20 PM
Community competitions help benchmark approaches in computational biology. Struck et al. now present GHIST 2024 - The First Genomic History Inference Strategies Tournament, for the inference of evolutionary history from genome data.
🔗 doi.org/10.1093/molbev/msaf257
#evobio #molbio #compbio #popgen
🔗 doi.org/10.1093/molbev/msaf257
#evobio #molbio #compbio #popgen
I started on Kaggle a week ago. It is the ultimate sandbox for anyone learning machine learning, from beginner to expert.
My goal is to sharpen my skills as a bioinformatician.
#MachineLearning #AI #DataScience #Bioinformatics #Genomics #SystemsBiology #DoOnlyGoodEveryday #ScienceForGood #CompBio
My goal is to sharpen my skills as a bioinformatician.
#MachineLearning #AI #DataScience #Bioinformatics #Genomics #SystemsBiology #DoOnlyGoodEveryday #ScienceForGood #CompBio
November 8, 2025 at 3:39 PM
I started on Kaggle a week ago. It is the ultimate sandbox for anyone learning machine learning, from beginner to expert.
My goal is to sharpen my skills as a bioinformatician.
#MachineLearning #AI #DataScience #Bioinformatics #Genomics #SystemsBiology #DoOnlyGoodEveryday #ScienceForGood #CompBio
My goal is to sharpen my skills as a bioinformatician.
#MachineLearning #AI #DataScience #Bioinformatics #Genomics #SystemsBiology #DoOnlyGoodEveryday #ScienceForGood #CompBio
Actively looking for a postdoc interested in host-virus evolution. Please apply to the #MahanFellowship This fellowship provides early career scientists with the opportunity to join a Fred Hutch CompBio lab (like ours!). If interested please contact me to coordinate proposal and apply by Dec 05 2025
Apply - Interfolio
{{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
apply.interfolio.com
October 1, 2025 at 5:40 PM
Actively looking for a postdoc interested in host-virus evolution. Please apply to the #MahanFellowship This fellowship provides early career scientists with the opportunity to join a Fred Hutch CompBio lab (like ours!). If interested please contact me to coordinate proposal and apply by Dec 05 2025
#compchem #compbio Happy to be part of this new paper just published in @commsbio.nature.com : "Targeting RNA with Small Molecules using State-of-the-Art Methods Provides Highly Predictive Affinities of Riboswitch Inhibitors."
www.nature.com/articles/s42...
@qubit-pharma.bsky.social
www.nature.com/articles/s42...
@qubit-pharma.bsky.social
October 1, 2025 at 1:15 PM
#compchem #compbio Happy to be part of this new paper just published in @commsbio.nature.com : "Targeting RNA with Small Molecules using State-of-the-Art Methods Provides Highly Predictive Affinities of Riboswitch Inhibitors."
www.nature.com/articles/s42...
@qubit-pharma.bsky.social
www.nature.com/articles/s42...
@qubit-pharma.bsky.social
That’s a wrap! Thank you to all speakers, poster presenters and attendees for making #CompBioGlasgow a success.
We hope the posts have sparked your interest in future CompBio events and that we'll see you in October for our next event!
We hope the posts have sparked your interest in future CompBio events and that we'll see you in October for our next event!
September 17, 2025 at 3:12 PM
That’s a wrap! Thank you to all speakers, poster presenters and attendees for making #CompBioGlasgow a success.
We hope the posts have sparked your interest in future CompBio events and that we'll see you in October for our next event!
We hope the posts have sparked your interest in future CompBio events and that we'll see you in October for our next event!
BioinforMara is getting more compbio data to nerd about ☺️
April 20, 2023 at 10:19 AM
BioinforMara is getting more compbio data to nerd about ☺️
Next time I meet a techie asking how to move into compbio I’ll connect them with you!
December 5, 2023 at 4:30 PM
Next time I meet a techie asking how to move into compbio I’ll connect them with you!
Code: https://github.com/theislab/regvelo
Code: https://github.com/theislab/regvelo_reproducibility
Website: https://research.stowers.org/compbio/ucsc_cellbrowser/
Code: https://github.com/theislab/regvelo_reproducibility
Website: https://research.stowers.org/compbio/ucsc_cellbrowser/
December 12, 2024 at 5:37 PM
7/7 This work led to some surprising insights about how these models actually represent physical reality, particularly the 'reaction loss' phenomenon... and that's a story of the just published paper! 😉 #CompBio #Biophysics #PhDLife #Science #Research
December 19, 2024 at 9:18 PM
7/7 This work led to some surprising insights about how these models actually represent physical reality, particularly the 'reaction loss' phenomenon... and that's a story of the just published paper! 😉 #CompBio #Biophysics #PhDLife #Science #Research
🔬 Hiring: Computational Biology Postdoc @UCSF!
to develop:
1️⃣ Novel deep learning models for spatial/single-cell multiomics
2️⃣ Single-cell analyses across development & disease
3️⃣ Open-source tools for the broader community
Apply here: opportunities.ucsf.edu/content/open...
#CompBio #PostdocJobs
to develop:
1️⃣ Novel deep learning models for spatial/single-cell multiomics
2️⃣ Single-cell analyses across development & disease
3️⃣ Open-source tools for the broader community
Apply here: opportunities.ucsf.edu/content/open...
#CompBio #PostdocJobs
Open Postdoctoral Position in Computational Genomics and Systems Biology
opportunities.ucsf.edu
December 11, 2024 at 4:36 AM
🔬 Hiring: Computational Biology Postdoc @UCSF!
to develop:
1️⃣ Novel deep learning models for spatial/single-cell multiomics
2️⃣ Single-cell analyses across development & disease
3️⃣ Open-source tools for the broader community
Apply here: opportunities.ucsf.edu/content/open...
#CompBio #PostdocJobs
to develop:
1️⃣ Novel deep learning models for spatial/single-cell multiomics
2️⃣ Single-cell analyses across development & disease
3️⃣ Open-source tools for the broader community
Apply here: opportunities.ucsf.edu/content/open...
#CompBio #PostdocJobs
🎨 Meet the creative minds behind #SCS2025!
Our amazing Design Committee is bringing the 21st ISCB Student Council Symposium to life 💫
🙌 Huge thanks to Ece, Gizem, Divy, Vuslat, Isabella & Akifur!
📍 Liverpool, 20 July 2025
#ISCB #CompBio #Bioinformatic
Our amazing Design Committee is bringing the 21st ISCB Student Council Symposium to life 💫
🙌 Huge thanks to Ece, Gizem, Divy, Vuslat, Isabella & Akifur!
📍 Liverpool, 20 July 2025
#ISCB #CompBio #Bioinformatic
June 27, 2025 at 2:47 PM
🎨 Meet the creative minds behind #SCS2025!
Our amazing Design Committee is bringing the 21st ISCB Student Council Symposium to life 💫
🙌 Huge thanks to Ece, Gizem, Divy, Vuslat, Isabella & Akifur!
📍 Liverpool, 20 July 2025
#ISCB #CompBio #Bioinformatic
Our amazing Design Committee is bringing the 21st ISCB Student Council Symposium to life 💫
🙌 Huge thanks to Ece, Gizem, Divy, Vuslat, Isabella & Akifur!
📍 Liverpool, 20 July 2025
#ISCB #CompBio #Bioinformatic
📢 Today is your last chance to register for the [BC]2 Basel Computational Biology Conference! From #AI to #Evolution, #GeneExpression and #PrecisionMedicine, join us at #bc2basel to hear about the latest #Bioinformatics & #CompBio trends.
📆 Deadline: 1 Sept
👉 Register: www.bc2.ch/registration...
📆 Deadline: 1 Sept
👉 Register: www.bc2.ch/registration...
September 1, 2025 at 6:50 AM
📢 Today is your last chance to register for the [BC]2 Basel Computational Biology Conference! From #AI to #Evolution, #GeneExpression and #PrecisionMedicine, join us at #bc2basel to hear about the latest #Bioinformatics & #CompBio trends.
📆 Deadline: 1 Sept
👉 Register: www.bc2.ch/registration...
📆 Deadline: 1 Sept
👉 Register: www.bc2.ch/registration...
Efficient evidence-based genome annotation with EviAnn
doi.org/10.1101/2025...
KIPEs3: Automatic annotation of biosynthesis pathways
doi.org/10.1101/2022...
#Bioinformatics #CompBio
doi.org/10.1101/2025...
KIPEs3: Automatic annotation of biosynthesis pathways
doi.org/10.1101/2022...
#Bioinformatics #CompBio
Efficient evidence-based genome annotation with EviAnn
For many years, machine learning-based ab initio gene finding approaches have been central components of eukaryotic genome annotation pipelines, and they remain so today. The reliance on these approac...
doi.org
September 16, 2025 at 5:01 AM
Efficient evidence-based genome annotation with EviAnn
doi.org/10.1101/2025...
KIPEs3: Automatic annotation of biosynthesis pathways
doi.org/10.1101/2022...
#Bioinformatics #CompBio
doi.org/10.1101/2025...
KIPEs3: Automatic annotation of biosynthesis pathways
doi.org/10.1101/2022...
#Bioinformatics #CompBio
Applications are open for our #CompBio Scholars Program! Learn more ⬇️
Strong #science needs support. Our #ComputationalBiology Scholars Program offers:
✅ Full funding
✅ One-on-one mentorship
✅ A collaborative research environment
Applications open now ➡️ bit.ly/3T0dYCy
✅ Full funding
✅ One-on-one mentorship
✅ A collaborative research environment
Applications open now ➡️ bit.ly/3T0dYCy
Computational Biology Scholars
The mission of The Graduate School of the Stowers Institute for Medical Research is to prepare a superb cadre of predoctoral researchers from around the…
bit.ly
October 17, 2025 at 5:52 PM
Applications are open for our #CompBio Scholars Program! Learn more ⬇️
Ok #compbio #bioinformatics folks - what’s peoples favorite journal for methods and software these days? NAR, plos comp bio, bioinformatics, gigascience, cell reports methods, or … and why?
January 1, 2025 at 8:31 PM
Ok #compbio #bioinformatics folks - what’s peoples favorite journal for methods and software these days? NAR, plos comp bio, bioinformatics, gigascience, cell reports methods, or … and why?
Then, we exchange perspectives on writing and running, and why we compbio folks should be doing both!
By the way, your feedback really keeps me going - if you have suggestions or comments, drop me a line 😊
By the way, your feedback really keeps me going - if you have suggestions or comments, drop me a line 😊
December 3, 2024 at 12:12 PM
Then, we exchange perspectives on writing and running, and why we compbio folks should be doing both!
By the way, your feedback really keeps me going - if you have suggestions or comments, drop me a line 😊
By the way, your feedback really keeps me going - if you have suggestions or comments, drop me a line 😊
$105M, nice haul @AdaptiveBiotech! <a href="http://bit.ly/1enpSuy." class="hover:underline text-blue-600 dark:text-sky-400 no-card-link" target="_blank" rel="noopener" data-link="bsky">http://bit.ly/1enpSuy. #PhD/#postdoc.s, join our #compbio team and help us found a new field of science.
April 8, 2014 at 3:23 AM
$105M, nice haul @AdaptiveBiotech! <a href="http://bit.ly/1enpSuy." class="hover:underline text-blue-600 dark:text-sky-400 no-card-link" target="_blank" rel="noopener" data-link="bsky">http://bit.ly/1enpSuy. #PhD/#postdoc.s, join our #compbio team and help us found a new field of science.
@anaconesa.bsky.social opening the Second General Assembly of the @bcbhubcsic.bsky.social at the main @csic.es site. Three days of #compbio and #bioinfo discussions ahead!
March 12, 2025 at 1:51 PM
@anaconesa.bsky.social opening the Second General Assembly of the @bcbhubcsic.bsky.social at the main @csic.es site. Three days of #compbio and #bioinfo discussions ahead!
FYI grad students and postdocs: summer internship in computational genomics at Vertex!
#gradSchool #postdoc #compBio #bioSky #biotech #bioinformatics #genomics
vrtx.wd5.myworkdayjobs.com/en-US/Vertex...
#gradSchool #postdoc #compBio #bioSky #biotech #bioinformatics #genomics
vrtx.wd5.myworkdayjobs.com/en-US/Vertex...
Vertex Summer 2025 Intern, Computational Genomics (Boston, MA)
Job Description The Vertex Internship Program offers students the opportunity to learn about the pharmaceutical industry from a hands-on perspective. You will be working closely with and learning from...
vrtx.wd5.myworkdayjobs.com
November 22, 2024 at 10:25 PM
FYI grad students and postdocs: summer internship in computational genomics at Vertex!
#gradSchool #postdoc #compBio #bioSky #biotech #bioinformatics #genomics
vrtx.wd5.myworkdayjobs.com/en-US/Vertex...
#gradSchool #postdoc #compBio #bioSky #biotech #bioinformatics #genomics
vrtx.wd5.myworkdayjobs.com/en-US/Vertex...
CompBio method developers: software that only runs on your computer and is not available via a repository like CRAN, PyPI, Bioconductor, is not a proper research output —
just like a set of scribbled notes on your desktop is not the same as a preprint or a paper.
Finish the job.
just like a set of scribbled notes on your desktop is not the same as a preprint or a paper.
Finish the job.
January 24, 2025 at 9:36 AM
CompBio method developers: software that only runs on your computer and is not available via a repository like CRAN, PyPI, Bioconductor, is not a proper research output —
just like a set of scribbled notes on your desktop is not the same as a preprint or a paper.
Finish the job.
just like a set of scribbled notes on your desktop is not the same as a preprint or a paper.
Finish the job.
Definitely #CompChem, also #CompBio not that I'm much in that community, and I'd say that the github.com/Frost-group/... stuff is definitely #Physics.
GitHub - Frost-group/MembraneElectrostatics.jl: Coarse-grain MD not fast enough? Try some Cahill inspired MembraneElectrostatics!
Coarse-grain MD not fast enough? Try some Cahill inspired MembraneElectrostatics! - Frost-group/MembraneElectrostatics.jl
github.com
February 21, 2025 at 7:06 PM
Definitely #CompChem, also #CompBio not that I'm much in that community, and I'd say that the github.com/Frost-group/... stuff is definitely #Physics.
UW-Madison Psychology is hiring a new assistant professor in the area of computational approaches to language (broadly construed). Please share with interested parties! jobs.wisc.edu/jobs/assista...
Assistant Professor, Computational Approaches to Language - Cluster Hire - Madison, Wisconsin, United States
Job Summary:
This position is a full-time, tenure-track faculty position at the Assistant Professor level in the Department of Psychology at UW-Madison. The search is for a job candidate whose exper...
jobs.wisc.edu
November 19, 2024 at 1:06 AM
Since I'm marking lab notebooks today - for others that do computational work, here is a great reference for how to put computational lab notebooks together. pmc.ncbi.nlm.nih.gov/articles/PMC...
In my lab we pair this with an up to date Github repository for each project.
#compbio #bioinformatics
In my lab we pair this with an up to date Github repository for each project.
#compbio #bioinformatics
Ten Simple Rules for a Computational Biologist’s Laboratory Notebook
pmc.ncbi.nlm.nih.gov
February 5, 2025 at 7:46 PM
Since I'm marking lab notebooks today - for others that do computational work, here is a great reference for how to put computational lab notebooks together. pmc.ncbi.nlm.nih.gov/articles/PMC...
In my lab we pair this with an up to date Github repository for each project.
#compbio #bioinformatics
In my lab we pair this with an up to date Github repository for each project.
#compbio #bioinformatics
Thank you for initiating this thread. I am at Columbia University. My lab develops #machinelearning #compbio methods for applications in #cancerimmunology #genomics data.
November 13, 2024 at 3:48 PM
Thank you for initiating this thread. I am at Columbia University. My lab develops #machinelearning #compbio methods for applications in #cancerimmunology #genomics data.