Daniel Franco-Barranco
@danifranco93.bsky.social
Postdoc in Albert Cardona's lab at MRC LMB
BiaPy is now In Galaxy!! Don't miss the chance of using it to build your workflows in the cloud ;D
🚀 Big news: BiaPy meets @galaxyproject.bsky.social! ⛴️🤝🌌
You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone.
👉 imaging.usegalaxy.eu?tool_id=tool...
#BioImageAnalysis #GalaxyProject #AI4Life #Bioimaging
You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone.
👉 imaging.usegalaxy.eu?tool_id=tool...
#BioImageAnalysis #GalaxyProject #AI4Life #Bioimaging
Galaxy
Galaxy is a community-driven web-based analysis platform for life science research.
imaging.usegalaxy.eu
October 21, 2025 at 9:19 AM
BiaPy is now In Galaxy!! Don't miss the chance of using it to build your workflows in the cloud ;D
Looking for a PhD in AI & bioimage analysis? 🤠This is basically the ‘boss level’ of opportunities: cutting-edge research + a mentor you’d actually want to have coffee with. Don’t miss it 👇
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬
📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...
📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group
The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...
cvpd.github.io
September 30, 2025 at 3:07 PM
Looking for a PhD in AI & bioimage analysis? 🤠This is basically the ‘boss level’ of opportunities: cutting-edge research + a mentor you’d actually want to have coffee with. Don’t miss it 👇
Reposted by Daniel Franco-Barranco
In the meantime, we have more than 46 pretrained models from ⛴️ BiaPy available now in the 🦒 Bioimage Model Zoo 🫶 @ai4life.bsky.social
🔗 Have a look at: bioimage.io#/models
As usual, they are accesible from BiaPy's GUI 🖥️, Colab notebooks 📔 and our API 🤓
🔗 Have a look at: bioimage.io#/models
As usual, they are accesible from BiaPy's GUI 🖥️, Colab notebooks 📔 and our API 🤓
BioImage.IO - Model Zoo
BioImage Model Zoo - A community-driven, open resource for sharing standardized AI models for bioimage analysis
bioimage.io
July 15, 2025 at 2:58 PM
In the meantime, we have more than 46 pretrained models from ⛴️ BiaPy available now in the 🦒 Bioimage Model Zoo 🫶 @ai4life.bsky.social
🔗 Have a look at: bioimage.io#/models
As usual, they are accesible from BiaPy's GUI 🖥️, Colab notebooks 📔 and our API 🤓
🔗 Have a look at: bioimage.io#/models
As usual, they are accesible from BiaPy's GUI 🖥️, Colab notebooks 📔 and our API 🤓
Reposted by Daniel Franco-Barranco
⛴️ BiaPy just reached version 3.6.1 💫 (latest release)!
github.com/BiaPyX/BiaPy...
➡️ v3.6.1 came right after (the more dense) v3.6.0 to fix some small bugs 🐞
Let me tell you a bit about what's new 👇
github.com/BiaPyX/BiaPy...
➡️ v3.6.1 came right after (the more dense) v3.6.0 to fix some small bugs 🐞
Let me tell you a bit about what's new 👇
Release Version 3.6.1 · BiaPyX/BiaPy
Minor:
Disable painting matching instances by default as it takes a lot of time, i.e. TEST.MATCHING_STATS_THS_COLORED_IMG to [] (#135)
Refine DA notebook
Update notebooks to install BiaPy v3.6.0
...
github.com
July 15, 2025 at 2:58 PM
⛴️ BiaPy just reached version 3.6.1 💫 (latest release)!
github.com/BiaPyX/BiaPy...
➡️ v3.6.1 came right after (the more dense) v3.6.0 to fix some small bugs 🐞
Let me tell you a bit about what's new 👇
github.com/BiaPyX/BiaPy...
➡️ v3.6.1 came right after (the more dense) v3.6.0 to fix some small bugs 🐞
Let me tell you a bit about what's new 👇
Reposted by Daniel Franco-Barranco
Prou (ex-)supervisor & (always) mentor of @ai4life.bsky.social @egomezm.bsky.social Teresa Zulueta Coarasa; @danifranco93.bsky.social @cfusterbarcelo.bsky.social Carlos Garcia Lopez de Haro @uc3m @cienciauc3m
May 29, 2025 at 1:57 PM
Prou (ex-)supervisor & (always) mentor of @ai4life.bsky.social @egomezm.bsky.social Teresa Zulueta Coarasa; @danifranco93.bsky.social @cfusterbarcelo.bsky.social Carlos Garcia Lopez de Haro @uc3m @cienciauc3m
Reposted by Daniel Franco-Barranco
💬 After lunch, we’re back with the AI4Life Community: tool builders, research infrastructures, and industry voices. Community tools like @biapyx.bsky.social and SpotMAX show how AI4Life partners are building bridges between developers and end users.
May 28, 2025 at 10:56 AM
💬 After lunch, we’re back with the AI4Life Community: tool builders, research infrastructures, and industry voices. Community tools like @biapyx.bsky.social and SpotMAX show how AI4Life partners are building bridges between developers and end users.
Reposted by Daniel Franco-Barranco
@biapyx.bsky.social & Bioimage Model Zoo making people Happy! 😅 at #neubiaspasteur2025 @jwpylvanainen.bsky.social @ai4life.bsky.social
May 15, 2025 at 10:37 AM
@biapyx.bsky.social & Bioimage Model Zoo making people Happy! 😅 at #neubiaspasteur2025 @jwpylvanainen.bsky.social @ai4life.bsky.social
Reposted by Daniel Franco-Barranco
No words needed! #neubiaspasteur2025 @iarganda.bsky.social @danifranco93.bsky.social @biapyx.bsky.social Thank you @jwpylvanainen.bsky.social
May 15, 2025 at 10:33 AM
No words needed! #neubiaspasteur2025 @iarganda.bsky.social @danifranco93.bsky.social @biapyx.bsky.social Thank you @jwpylvanainen.bsky.social
Don’t miss the opportunity to work with a scientist like @iarganda.bsky.social !! Kind, honest and brilliant! Plus, the position is located in the beautiful Donostia / San Sebastian. What more do you need? 👇👇
🆕 We're hiring! We're looking for postdoc 🎓 candidates to work at the intersaction of bioimage analysis 🖥️🔬, tissue biomechanics 🧫, and neuroscience 🧠.
👉 Application deadline: 2025/06/02
👉 Duration: July 2025 - December 2026 (for now)
Come work with us! 🤗
dipc.ehu.eus/en/dipc/join...
👉 Application deadline: 2025/06/02
👉 Duration: July 2025 - December 2026 (for now)
Come work with us! 🤗
dipc.ehu.eus/en/dipc/join...
Joint Postdoctoral Position in Biophysics – Bioimage Analysis / AI / Neuroscience
dipc.ehu.eus
May 15, 2025 at 10:56 AM
Don’t miss the opportunity to work with a scientist like @iarganda.bsky.social !! Kind, honest and brilliant! Plus, the position is located in the beautiful Donostia / San Sebastian. What more do you need? 👇👇
Reposted by Daniel Franco-Barranco
Kudos to you, my captain! 🦸♂️
a man with dreadlocks and a beard is wearing a pirate hat and pointing at something .
ALT: a man with dreadlocks and a beard is wearing a pirate hat and pointing at something .
media.tenor.com
April 30, 2025 at 6:18 AM
Kudos to you, my captain! 🦸♂️
Reposted by Daniel Franco-Barranco
So happy to see this finally out! 🤗 Amazing job from an awesome team: @ivanhcenalmor.bsky.social, @aaitorg.bsky.social, @caporalclement.bsky.social, @lmescu.bsky.social, @arratemunoz.bsky.social munoz.bsky.social, & more! Specially proud of @danifranco93.bsky.social that dedicated his PhD to this 🥰
🚀 Excited to share that our work on BiaPy has been published today in Nature Methods!
BiaPy makes deep learning accessible for bioimage analysis, from small datasets to terabyte-scale 3D images. 👇 (1/7)
🔗 www.nature.com/articles/s41...
#DeepLearning #BioimageAnalysis #OpenSource #BiaPy
BiaPy makes deep learning accessible for bioimage analysis, from small datasets to terabyte-scale 3D images. 👇 (1/7)
🔗 www.nature.com/articles/s41...
#DeepLearning #BioimageAnalysis #OpenSource #BiaPy
BiaPy: accessible deep learning on bioimages - Nature Methods
Nature Methods - BiaPy: accessible deep learning on bioimages
www.nature.com
April 29, 2025 at 9:42 AM
So happy to see this finally out! 🤗 Amazing job from an awesome team: @ivanhcenalmor.bsky.social, @aaitorg.bsky.social, @caporalclement.bsky.social, @lmescu.bsky.social, @arratemunoz.bsky.social munoz.bsky.social, & more! Specially proud of @danifranco93.bsky.social that dedicated his PhD to this 🥰
Finally BiaPy is out in Nature Methods! 🥳🥳🥳
A major milestone in my research! I'm incredibly proud of the progress made. Huge thanks to my PhD supervisors, @iarganda.bsky.social and @arratemunoz.bsky.social , for their invaluable guidance and support throughout this journey.
Check out the thread🧵👇
A major milestone in my research! I'm incredibly proud of the progress made. Huge thanks to my PhD supervisors, @iarganda.bsky.social and @arratemunoz.bsky.social , for their invaluable guidance and support throughout this journey.
Check out the thread🧵👇
🚀 Excited to share that our work on BiaPy has been published today in Nature Methods!
BiaPy makes deep learning accessible for bioimage analysis, from small datasets to terabyte-scale 3D images. 👇 (1/7)
🔗 www.nature.com/articles/s41...
#DeepLearning #BioimageAnalysis #OpenSource #BiaPy
BiaPy makes deep learning accessible for bioimage analysis, from small datasets to terabyte-scale 3D images. 👇 (1/7)
🔗 www.nature.com/articles/s41...
#DeepLearning #BioimageAnalysis #OpenSource #BiaPy
BiaPy: accessible deep learning on bioimages - Nature Methods
Nature Methods - BiaPy: accessible deep learning on bioimages
www.nature.com
April 29, 2025 at 9:47 AM
Finally BiaPy is out in Nature Methods! 🥳🥳🥳
A major milestone in my research! I'm incredibly proud of the progress made. Huge thanks to my PhD supervisors, @iarganda.bsky.social and @arratemunoz.bsky.social , for their invaluable guidance and support throughout this journey.
Check out the thread🧵👇
A major milestone in my research! I'm incredibly proud of the progress made. Huge thanks to my PhD supervisors, @iarganda.bsky.social and @arratemunoz.bsky.social , for their invaluable guidance and support throughout this journey.
Check out the thread🧵👇
Reposted by Daniel Franco-Barranco
🆕 Did you experience troubles ⚠️ while installing BiaPy in our Google Colab notebooks? We did too! This is due to some updates in the default libraries of Colab. As a temporary solution, we have now included a new cell in the notebooks to reinstall the conflicting libraries 👇
March 28, 2025 at 1:11 PM
🆕 Did you experience troubles ⚠️ while installing BiaPy in our Google Colab notebooks? We did too! This is due to some updates in the default libraries of Colab. As a temporary solution, we have now included a new cell in the notebooks to reinstall the conflicting libraries 👇
Reposted by Daniel Franco-Barranco
🆕 Now that the bugs have been fixed 🙃, we have a new video 📹 tutorial on how to import pretrained models from the BioImage Model Zoo 🦒 into your #BiaPy workflow using our friendly GUI 🖥️, by @iarganda.bsky.social:
youtu.be/Zq50Ew1s8ag
youtu.be/Zq50Ew1s8ag
BiaPy GUI: Import models from the BioImage Model Zoo
YouTube video by BiaPy
youtu.be
January 25, 2025 at 2:18 PM
🆕 Now that the bugs have been fixed 🙃, we have a new video 📹 tutorial on how to import pretrained models from the BioImage Model Zoo 🦒 into your #BiaPy workflow using our friendly GUI 🖥️, by @iarganda.bsky.social:
youtu.be/Zq50Ew1s8ag
youtu.be/Zq50Ew1s8ag
Reposted by Daniel Franco-Barranco
It took me more than 4 years to capture a scene I could only dream of. A magnificent Condor soars above the peaks of Argentina's Mount Fitz Roy, as they are spot lit in beautiful morning light. 🪶
#bluesky #photography #landscape #birds #nature
#landscapephotography #naturephotography #travel #scape
#bluesky #photography #landscape #birds #nature
#landscapephotography #naturephotography #travel #scape
January 23, 2025 at 12:47 PM
It took me more than 4 years to capture a scene I could only dream of. A magnificent Condor soars above the peaks of Argentina's Mount Fitz Roy, as they are spot lit in beautiful morning light. 🪶
#bluesky #photography #landscape #birds #nature
#landscapephotography #naturephotography #travel #scape
#bluesky #photography #landscape #birds #nature
#landscapephotography #naturephotography #travel #scape
Don't miss the chance to check what's new in BiaPy's GUI! 😍
👋 Hi everybody! We have a new release of ⛴️ BiaPy's GUI 🖥️ (v1.1.5) with plenty of new features ✨ and bug 🐞 fixes! Let me show you some of the novelties 👇
github.com/BiaPyX/BiaPy...
github.com/BiaPyX/BiaPy...
Release Version 1.1.5 · BiaPyX/BiaPy-GUI
Major:
Move to PySide6
Add splash screen
Enforce the light theme with pyqtdarktheme to prevent the automatic macOS white font change
Add initial GUI tour window
Update container download process:
...
github.com
January 24, 2025 at 1:42 PM
Don't miss the chance to check what's new in BiaPy's GUI! 😍
Reposted by Daniel Franco-Barranco
When you’re imaging and your sample takes a Pikachu!
Having fun playing around with our new #Nikon NSPARC for #FluorescenceFriday
#microscopy #myosin #epithelial #cellbiology #meme
@tyskalabactual.bsky.social
Having fun playing around with our new #Nikon NSPARC for #FluorescenceFriday
#microscopy #myosin #epithelial #cellbiology #meme
@tyskalabactual.bsky.social
December 6, 2024 at 5:25 PM
When you’re imaging and your sample takes a Pikachu!
Having fun playing around with our new #Nikon NSPARC for #FluorescenceFriday
#microscopy #myosin #epithelial #cellbiology #meme
@tyskalabactual.bsky.social
Having fun playing around with our new #Nikon NSPARC for #FluorescenceFriday
#microscopy #myosin #epithelial #cellbiology #meme
@tyskalabactual.bsky.social
Reposted by Daniel Franco-Barranco
Welcome to the Science feed!
Please read our FAQs for instructions for how to be added as a contributor: bossett.io/science-feed/
Mod introductory posts linked below⬇️
Use the test tube emoji on posts you want to appear in the feed🧪
Please like the feed and make sure you follow our feed rules:
Please read our FAQs for instructions for how to be added as a contributor: bossett.io/science-feed/
Mod introductory posts linked below⬇️
Use the test tube emoji on posts you want to appear in the feed🧪
Please like the feed and make sure you follow our feed rules:
February 10, 2024 at 3:08 PM
Welcome to the Science feed!
Please read our FAQs for instructions for how to be added as a contributor: bossett.io/science-feed/
Mod introductory posts linked below⬇️
Use the test tube emoji on posts you want to appear in the feed🧪
Please like the feed and make sure you follow our feed rules:
Please read our FAQs for instructions for how to be added as a contributor: bossett.io/science-feed/
Mod introductory posts linked below⬇️
Use the test tube emoji on posts you want to appear in the feed🧪
Please like the feed and make sure you follow our feed rules:
Reposted by Daniel Franco-Barranco
Check out #ZebrafishZunday every Sunday for fintastic fish #sciart! 🧪
December 1, 2024 at 2:49 PM
Check out #ZebrafishZunday every Sunday for fintastic fish #sciart! 🧪
Is there any list I can join to see posts related to connectomics? 🧪🧪
November 24, 2024 at 8:50 AM
Is there any list I can join to see posts related to connectomics? 🧪🧪
Reposted by Daniel Franco-Barranco
Did you like what you heard about BiaPy at #SPAOM2024? 🔬 Are you interested in giving its GUI a try? 🖥️🧙 Search no more! Here you have our walkthrough video tutorial on BiaPy's GUI by @danifranco93.bsky.social 🤗
Let us know your thoughts, all feedback is welcome! 🤩
youtu.be/vY7aBh5FUNk?...
Let us know your thoughts, all feedback is welcome! 🤩
youtu.be/vY7aBh5FUNk?...
BiaPy graphical user interface walkthrough
YouTube video by BiaPy
youtu.be
November 22, 2024 at 5:00 PM
Did you like what you heard about BiaPy at #SPAOM2024? 🔬 Are you interested in giving its GUI a try? 🖥️🧙 Search no more! Here you have our walkthrough video tutorial on BiaPy's GUI by @danifranco93.bsky.social 🤗
Let us know your thoughts, all feedback is welcome! 🤩
youtu.be/vY7aBh5FUNk?...
Let us know your thoughts, all feedback is welcome! 🤩
youtu.be/vY7aBh5FUNk?...
With how easily I get cold, I’ve had the luck to come to Cambridge during the coldest weeks of the year, according to the locals! Lucky me! 🧊🧊❄️❄️
November 21, 2024 at 6:06 PM
With how easily I get cold, I’ve had the luck to come to Cambridge during the coldest weeks of the year, according to the locals! Lucky me! 🧊🧊❄️❄️
Don't miss the chance of knowing the last updates of BiaPy in #SPAOM2024!!! 🔬🤓
and 4️⃣, on Friday at 10:45am (Sala Toledo), I will be presenting the history and current state of @biapyx.bsky.social with my talk "BiaPy: Bioimage Analysis workflows for all audiences", see you all there! 😊 #SPAOM2024
November 21, 2024 at 7:03 AM
Don't miss the chance of knowing the last updates of BiaPy in #SPAOM2024!!! 🔬🤓