Costa Lab
@costalab.bsky.social
This is the official twitter account from the Institute of Computational Genomics, RWTH Aachen.
Very 🔥 science on DNA acessibility and TF footprinting from the @lucapinello.bsky.social lab!
4/ ACCESS-ATAC significantly improves TF binding site prediction, and in single-cell ACCESS-ATAC experiments, we resolve TF binding profiles at equal sensitivity to ATAC-seq with 2-3x fewer cells.
December 23, 2024 at 6:32 PM
Very 🔥 science on DNA acessibility and TF footprinting from the @lucapinello.bsky.social lab!
Reposted by Costa Lab
4/ ACCESS-ATAC significantly improves TF binding site prediction, and in single-cell ACCESS-ATAC experiments, we resolve TF binding profiles at equal sensitivity to ATAC-seq with 2-3x fewer cells.
December 23, 2024 at 3:18 PM
4/ ACCESS-ATAC significantly improves TF binding site prediction, and in single-cell ACCESS-ATAC experiments, we resolve TF binding profiles at equal sensitivity to ATAC-seq with 2-3x fewer cells.
Reposted by Costa Lab
Our new paper out today: A bioprinted and scalable model of human tubulointerstitial kidney fibrosis. Led by Daphne Bouwens, Nazanin Kabgani and Jitske Jansen www.sciencedirect.com/science/arti...
A Bioprinted and Scalable Model of Human Tubulo-Interstitial Kidney Fibrosis
Chronic kidney disease (CKD) affects more than 10 % of the global population. As kidney function negatively correlates with the presence of interstiti…
www.sciencedirect.com
December 13, 2024 at 6:34 AM
Our new paper out today: A bioprinted and scalable model of human tubulointerstitial kidney fibrosis. Led by Daphne Bouwens, Nazanin Kabgani and Jitske Jansen www.sciencedirect.com/science/arti...
Reposted by Costa Lab
Reposted by Costa Lab
We are recruiting a Tenure-track Assistant Professor "Machine Learning in the Life Sciences" at the Medical University of Vienna. We will nominate the top candidate for a € 1.8 million starting grant by a Viennese foundation. Deadline: Dec 31st. Details: medical-epigenomics.org/files/Tenure...
December 2, 2024 at 9:35 AM
We are recruiting a Tenure-track Assistant Professor "Machine Learning in the Life Sciences" at the Medical University of Vienna. We will nominate the top candidate for a € 1.8 million starting grant by a Viennese foundation. Deadline: Dec 31st. Details: medical-epigenomics.org/files/Tenure...
Reposted by Costa Lab
Have AI or ML skills? Have applied them to biological problems or high dimensional data problems? Want to get to a mechanistic understanding of animal behaviour and environmental influences on life? Want to live in Rome, work in an international, english speaking institute? Apply below!
We are excited to be launching a call for an independent fellow in machine learning and AI at EMBL Rome. Bring your ideas for applying ML/AI tools to understand omics, animal behavior, and/or neural activity datasets to EMBL's unique collaborative research environment. www.embl.org/jobs/positio...
December 1, 2024 at 6:14 PM
Have AI or ML skills? Have applied them to biological problems or high dimensional data problems? Want to get to a mechanistic understanding of animal behaviour and environmental influences on life? Want to live in Rome, work in an international, english speaking institute? Apply below!
We are happy to present SIGURD, a framework for single cell level analysis of somatic and mitochondrial variants from scRNA-seq data. This end-to-end framework allows genotyping, QC, functional analysis and data integration academic.oup.com/bib/article/... 1/5
November 25, 2024 at 3:41 PM
We are happy to present SIGURD, a framework for single cell level analysis of somatic and mitochondrial variants from scRNA-seq data. This end-to-end framework allows genotyping, QC, functional analysis and data integration academic.oup.com/bib/article/... 1/5
And we get no break ... Saturday morning at home and I found another low dimensional embbeding (HATCH-MAP) in the floor.
November 24, 2024 at 9:26 AM
And we get no break ... Saturday morning at home and I found another low dimensional embbeding (HATCH-MAP) in the floor.