Carsen Stringer (she/her)
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computingnature.neuromatch.social.ap.brid.gy
Carsen Stringer (she/her)
@computingnature.neuromatch.social.ap.brid.gy
group leader @ HHMIJanelia, thinking about thinking, 🔬#suite2p #cellpose #facemap #rastermap | diversity and open-science for better science | Ⓥ | […]

[bridged from https://neuromatch.social/@computingnature on the fediverse by https://fed.brid.gy/ ]
We wrote a review on analysis methods for large-scale neural recordings https://www.science.org/stoken/author-tokens/ST-2239/full @marius10p #neuroscience 🧠

Anything we missed? Reply w/ your fav method!
November 15, 2024 at 2:27 PM
Reposted by Carsen Stringer (she/her)
Today, I felt more ready to look systematically at what the handful of politicians and lawyers who are I deeply respect are saying. I’m sharing the best of what I have found. I don’t agree with every last word, but I agree with much and the rest is worth considering. These are people I would go […]
Original post on mastodon.social
mastodon.social
November 8, 2024 at 7:26 PM
Laura Grima et al provide new insights into the algorithms mice use when learning to forage in large environments with many potential resources! https://biorxiv.org/content/10.1101/2024.11.04.621923v2
November 8, 2024 at 9:17 PM
Reposted by Carsen Stringer (she/her)
If women gave up every time we got evidence people hate us or just don't even consider us people, nothing would ever get done.

So take a minute, feel/"honor" the awful feelings, because they're real, but then we're back to our regularly scheduled program of building the least-worst world we can.
November 6, 2024 at 11:56 AM
Reposted by Carsen Stringer (she/her)
Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image...
2024 Image Analysis Survey
The Center for Open Bioimage Analysis , Bioimaging North America , the Royal Microscopical Society, and the Global Bioimage Analysts’ Society have now released a new and improved edition of our biannu...
forum.image.sc
October 21, 2024 at 8:55 AM
Reposted by Carsen Stringer (she/her)
Virtual I2K starts TOMORROW, Monday the 28th! 34 FREE sessions, 900+ registrants so far. Learn more about favorite #bioimageanalysis tools or find your next favorite! i2kconference.org/virtual

Please also help our community improve by filling out our survey - forum.image.sc/t/2024-image...
October 27, 2024 at 9:48 AM
Reposted by Carsen Stringer (she/her)
Alright, #fetchallreplies , backend edition is open as a PR against upstream masto: https://github.com/mastodon/mastodon/pull/32615

Please roast me for my code and help me get it into a state where we can make this default behavior for masto instances and remove one of the biggest contributors […]
Original post on neuromatch.social
neuromatch.social
October 21, 2024 at 8:08 PM
Six tips for going public with your lab’s software: https://www.nature.com/articles/d41586-024-03344-y
1) make time for maintenance
2) simplify installation
3) add a GUI or good CLI
4) good documentation
5) use github/git
6) automated testing

Any other tips people have? #softwareengineering
October 18, 2024 at 12:18 PM
🌟 Exciting news! Applications for HHMI’s #gilliamfellows Program are now open.🚀

The program empowers graduate students & their advisors committed to advancing equity & inclusion in science.

Applications due 12/5/24, 2 PM ET.

Learn more & apply now: https://hhmi.news/4dLSXUF

#biology […]
Original post on neuromatch.social
neuromatch.social
October 18, 2024 at 12:06 PM
📢 #rastermap paper out now, easily explore and visualize your neural recordings 🐭🐒🐟 and ANNs 🤖 https://nature.com/articles/s41593-024-01783-4. Updates from preprint include analyses of primate data and IBL task data.

Video tutorial: https://youtu.be/oQHq7yUWn2k #neuroscience #machinelearning
October 16, 2024 at 9:48 PM
Applications are open for Janelia's jr scientist workshop on mechanistic cognitive #neuroscience 🧠 🐭 🐠 🐒 🪱. Hotel, meals & travel fully covered! Apply by Oct. 8 @ https://janelia.news/CNW25
October 1, 2024 at 6:20 PM
Applications are now open for Janelia’s two joint graduate programs with Johns Hopkins: Neuroscience and Cross-Disciplinary Biology (XDBio)! Due Dec 1! 🧠 🔬 🐟 🐀 🤖 https://www.janelia.org/you-janelia/students-and-postdocs/joint-graduate-programs
September 25, 2024 at 11:13 AM
Discovery of spiking network model parameters constrained by neural recordings, using simulation-based inference https://www.biorxiv.org/content/10.1101/2024.08.21.608969v2 #neuroscience
September 10, 2024 at 6:18 AM