Claire Lemaitre
@clairelemaitre.bsky.social
Researcher in computational biology at Inria, Rennes, France.
Part of the @genscaleteam.bsky.social team.
https://people.rennes.inria.fr/Claire.Lemaitre/index.php
Part of the @genscaleteam.bsky.social team.
https://people.rennes.inria.fr/Claire.Lemaitre/index.php
Reposted by Claire Lemaitre
🌎👩🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
September 3, 2025 at 8:39 AM
🌎👩🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open.
doi.org/10.1101/2024...
Reposted by Claire Lemaitre
👏 Ca y est, #JOBIM2025 est officiellement fini !
Au nom de toute l'équipe, merci pour votre participation, et pour toutes ces discussions scientifiques intenses et stimulantes.
Merci aussi pour votre enthousiasme, votre bienveillance et tous ces rires échangés pendant la conférence.
1/2 ⤵️
Au nom de toute l'équipe, merci pour votre participation, et pour toutes ces discussions scientifiques intenses et stimulantes.
Merci aussi pour votre enthousiasme, votre bienveillance et tous ces rires échangés pendant la conférence.
1/2 ⤵️
July 11, 2025 at 7:31 PM
👏 Ca y est, #JOBIM2025 est officiellement fini !
Au nom de toute l'équipe, merci pour votre participation, et pour toutes ces discussions scientifiques intenses et stimulantes.
Merci aussi pour votre enthousiasme, votre bienveillance et tous ces rires échangés pendant la conférence.
1/2 ⤵️
Au nom de toute l'équipe, merci pour votre participation, et pour toutes ces discussions scientifiques intenses et stimulantes.
Merci aussi pour votre enthousiasme, votre bienveillance et tous ces rires échangés pendant la conférence.
1/2 ⤵️
Reposted by Claire Lemaitre
Congratulations to Rayan Chiki, (Institut Pasteur) head of the “Sequence Bioinformatics” unit, for securing the ERC Proof of Concept 2025 for his project ENZYMINER! 👏
@rayan.chiki.bsky.social
#Bioinformatics
@rayan.chiki.bsky.social
#Bioinformatics
July 24, 2025 at 3:10 PM
Congratulations to Rayan Chiki, (Institut Pasteur) head of the “Sequence Bioinformatics” unit, for securing the ERC Proof of Concept 2025 for his project ENZYMINER! 👏
@rayan.chiki.bsky.social
#Bioinformatics
@rayan.chiki.bsky.social
#Bioinformatics
Reposted by Claire Lemaitre
#JOBIM2025 glad to have Jana Ebler as keynote speaker in our mini symposium on graphs for pangenomics
July 10, 2025 at 1:19 PM
#JOBIM2025 glad to have Jana Ebler as keynote speaker in our mini symposium on graphs for pangenomics
Reposted by Claire Lemaitre
Honestly seamless organization, good food, well done Bordeaux 👏🏻👏🏻
July 11, 2025 at 1:33 PM
Honestly seamless organization, good food, well done Bordeaux 👏🏻👏🏻
Reposted by Claire Lemaitre
We finished this edition with a delightful keynote by Jean Monlong who guided us through his journey about finding SVs in pangenomes #JOBIM2025 👏🏻
July 11, 2025 at 1:32 PM
We finished this edition with a delightful keynote by Jean Monlong who guided us through his journey about finding SVs in pangenomes #JOBIM2025 👏🏻
Reposted by Claire Lemaitre
This is going to be a cool event, invited talk by Jana Ebler + discussion panel and latest research activities in graphs+pangenomics!
Also check the pangenomics mini-symposium, TBA a flash talk by @imartayan.bsky.social 🧬
June 18, 2025 at 7:48 AM
This is going to be a cool event, invited talk by Jana Ebler + discussion panel and latest research activities in graphs+pangenomics!
Reposted by Claire Lemaitre
Oh hey, the Harpy paper is out. The software's been available, but it's nice to have something in writing! It also works with other linked read data and non-linked data (wgs, rad) 😁
@bioinfoadv.bsky.social on Bluesky
🧬 Explore the latest from Bioinformatics Advances: “Harpy: A pipeline for processing haplotagging linked-read data”
Read the full paper here: https://doi.org/10.1093/bioadv/vbaf133
Authors include: @pvdimens.bsky.social
bsky.app
June 18, 2025 at 11:29 AM
Oh hey, the Harpy paper is out. The software's been available, but it's nice to have something in writing! It also works with other linked read data and non-linked data (wgs, rad) 😁
Reposted by Claire Lemaitre
It is with joy and exhaustion I'd like to announce the release of Harpy v2 🎆.
What's different? Uh, almost everything. The changelog is so long that even I don't want to read it. BUT. IT WORKS WITH WGS DATA. AND MOST LINKED READ TECH. it just works 🙂
github.com/pdimens/harpy
What's different? Uh, almost everything. The changelog is so long that even I don't want to read it. BUT. IT WORKS WITH WGS DATA. AND MOST LINKED READ TECH. it just works 🙂
github.com/pdimens/harpy
GitHub - pdimens/harpy: Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too! - pdimens/harpy
github.com
April 30, 2025 at 1:35 AM
It is with joy and exhaustion I'd like to announce the release of Harpy v2 🎆.
What's different? Uh, almost everything. The changelog is so long that even I don't want to read it. BUT. IT WORKS WITH WGS DATA. AND MOST LINKED READ TECH. it just works 🙂
github.com/pdimens/harpy
What's different? Uh, almost everything. The changelog is so long that even I don't want to read it. BUT. IT WORKS WITH WGS DATA. AND MOST LINKED READ TECH. it just works 🙂
github.com/pdimens/harpy
Reposted by Claire Lemaitre
Maybe the simplest idea to decrease overestimations of a counting bloom filter. A trivial observation + 10 lines of code.
I'm surprised it has not been described before. Please comment if this is not the case.
Blog post here:
pierrepeterlongo.github.io/2025/03/17/m... 🧪🧬🖥️
I'm surprised it has not been described before. Please comment if this is not the case.
Blog post here:
pierrepeterlongo.github.io/2025/03/17/m... 🧪🧬🖥️
March 18, 2025 at 4:31 PM
Maybe the simplest idea to decrease overestimations of a counting bloom filter. A trivial observation + 10 lines of code.
I'm surprised it has not been described before. Please comment if this is not the case.
Blog post here:
pierrepeterlongo.github.io/2025/03/17/m... 🧪🧬🖥️
I'm surprised it has not been described before. Please comment if this is not the case.
Blog post here:
pierrepeterlongo.github.io/2025/03/17/m... 🧪🧬🖥️
Reposted by Claire Lemaitre
🚨 Keynotes at RECOMB-seq 2025! 🚨
🌟 Alicia Oshlack – computational transcriptomics
@aliciao.bsky.social
🌟 Rayan Chikhi – sequencing data structures
@rayanchikhi.bsky.social
🗓️ Dates: April 24–25, 2025
📍 Seoul, South Korea
recomb-seq.github.io/speakers/
🌟 Alicia Oshlack – computational transcriptomics
@aliciao.bsky.social
🌟 Rayan Chikhi – sequencing data structures
@rayanchikhi.bsky.social
🗓️ Dates: April 24–25, 2025
📍 Seoul, South Korea
recomb-seq.github.io/speakers/
January 24, 2025 at 10:32 AM
🚨 Keynotes at RECOMB-seq 2025! 🚨
🌟 Alicia Oshlack – computational transcriptomics
@aliciao.bsky.social
🌟 Rayan Chikhi – sequencing data structures
@rayanchikhi.bsky.social
🗓️ Dates: April 24–25, 2025
📍 Seoul, South Korea
recomb-seq.github.io/speakers/
🌟 Alicia Oshlack – computational transcriptomics
@aliciao.bsky.social
🌟 Rayan Chikhi – sequencing data structures
@rayanchikhi.bsky.social
🗓️ Dates: April 24–25, 2025
📍 Seoul, South Korea
recomb-seq.github.io/speakers/
Reposted by Claire Lemaitre
➡️ M Jean Monlong sera #keynote speaker à #JOBIM2025 !
Il travaille à l'Institut de Recherche en Santé Digestive de Toulouse.
💊 Si la génomique fonctionnelle et intégrative vous intéresse, ne manquez pas de l'écouter et de le rencontrer en Juillet à Bordeaux pour #JOBIM2025 !
Il travaille à l'Institut de Recherche en Santé Digestive de Toulouse.
💊 Si la génomique fonctionnelle et intégrative vous intéresse, ne manquez pas de l'écouter et de le rencontrer en Juillet à Bordeaux pour #JOBIM2025 !
January 27, 2025 at 8:14 AM
➡️ M Jean Monlong sera #keynote speaker à #JOBIM2025 !
Il travaille à l'Institut de Recherche en Santé Digestive de Toulouse.
💊 Si la génomique fonctionnelle et intégrative vous intéresse, ne manquez pas de l'écouter et de le rencontrer en Juillet à Bordeaux pour #JOBIM2025 !
Il travaille à l'Institut de Recherche en Santé Digestive de Toulouse.
💊 Si la génomique fonctionnelle et intégrative vous intéresse, ne manquez pas de l'écouter et de le rencontrer en Juillet à Bordeaux pour #JOBIM2025 !
Reposted by Claire Lemaitre
➡️ M Eric Rivals sera #keynote speaker à #JOBIM2025 !
Eric mène sa recherche au Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier.
🧬 Si le développement de méthodes et d'algorithmes pour les séquences vous intéresse, rendez-vous en Juillet à Bordeaux pour #JOBIM2025 !
Eric mène sa recherche au Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier.
🧬 Si le développement de méthodes et d'algorithmes pour les séquences vous intéresse, rendez-vous en Juillet à Bordeaux pour #JOBIM2025 !
January 23, 2025 at 8:48 AM
➡️ M Eric Rivals sera #keynote speaker à #JOBIM2025 !
Eric mène sa recherche au Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier.
🧬 Si le développement de méthodes et d'algorithmes pour les séquences vous intéresse, rendez-vous en Juillet à Bordeaux pour #JOBIM2025 !
Eric mène sa recherche au Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier.
🧬 Si le développement de méthodes et d'algorithmes pour les séquences vous intéresse, rendez-vous en Juillet à Bordeaux pour #JOBIM2025 !
Reposted by Claire Lemaitre
bsky.app/profile/pier...
Applications for this position are still open. If you're passionate about large-scale science, we'd love to hear from you.
🧬 & 🖥️
Applications for this position are still open. If you're passionate about large-scale science, we'd love to hear from you.
🧬 & 🖥️
🚨🚨🚨
We are hiring
🚨🚨🚨
After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations.
With @rayanchikhi.bsky.social and @tlemane.bsky.social
Details + applications: recrutement.inria.fr/public/class...
We are hiring
🚨🚨🚨
After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations.
With @rayanchikhi.bsky.social and @tlemane.bsky.social
Details + applications: recrutement.inria.fr/public/class...
January 8, 2025 at 11:27 AM
bsky.app/profile/pier...
Applications for this position are still open. If you're passionate about large-scale science, we'd love to hear from you.
🧬 & 🖥️
Applications for this position are still open. If you're passionate about large-scale science, we'd love to hear from you.
🧬 & 🖥️
Reposted by Claire Lemaitre
🚨🚨🚨
We are hiring
🚨🚨🚨
After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations.
With @rayanchikhi.bsky.social and @tlemane.bsky.social
Details + applications: recrutement.inria.fr/public/class...
We are hiring
🚨🚨🚨
After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations.
With @rayanchikhi.bsky.social and @tlemane.bsky.social
Details + applications: recrutement.inria.fr/public/class...
December 12, 2024 at 2:30 PM
🚨🚨🚨
We are hiring
🚨🚨🚨
After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations.
With @rayanchikhi.bsky.social and @tlemane.bsky.social
Details + applications: recrutement.inria.fr/public/class...
We are hiring
🚨🚨🚨
After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations.
With @rayanchikhi.bsky.social and @tlemane.bsky.social
Details + applications: recrutement.inria.fr/public/class...