ChimeraX
@chimerax.ucsf.edu
UCSF ChimeraX - software for visualizing biomolecules
When ChimeraX runs Boltz it uses the boltz --use_msa_server flag which uses the Colabfold MSA server api.colabfold.com. ChimeraX remembers the MSA results in ~/Downloads/ChimeraX/Boltz so if you run predictions with the same sequences it uses the cached MSA.
June 6, 2025 at 8:45 PM
When ChimeraX runs Boltz it uses the boltz --use_msa_server flag which uses the Colabfold MSA server api.colabfold.com. ChimeraX remembers the MSA results in ~/Downloads/ChimeraX/Boltz so if you run predictions with the same sequences it uses the cached MSA.