Casper Jamin
@casperjamin.bsky.social
Medical Molecular Microbiologist in training @ RIVM. Interested in all microbiology but especially the wonderful world of mobile genetic elements
What about its accuracy on SNP lvl?
May 29, 2025 at 6:30 AM
What about its accuracy on SNP lvl?
Gaaf! Leuk dat je schimmels meer in het algemeen daglicht weet te krijgen in het kader van gezondheid
February 27, 2025 at 11:11 AM
Gaaf! Leuk dat je schimmels meer in het algemeen daglicht weet te krijgen in het kader van gezondheid
No big difference lately. Had a run of 17gb
March 11, 2024 at 7:40 PM
No big difference lately. Had a run of 17gb
Of course mainly depending genome size
February 22, 2024 at 4:28 PM
Of course mainly depending genome size
96 on a promethion, ~16 for minion flowcell. Don’t know about flongles
February 22, 2024 at 4:28 PM
96 on a promethion, ~16 for minion flowcell. Don’t know about flongles
Oh and of course R10.4.1 flowcells!
February 21, 2024 at 8:14 PM
Oh and of course R10.4.1 flowcells!
TLDR: >40x coverage needed, rerio basecalling needed. Miniasm works better than Flye for genomic epi, flye works better for amr genotyping.
February 21, 2024 at 8:09 PM
TLDR: >40x coverage needed, rerio basecalling needed. Miniasm works better than Flye for genomic epi, flye works better for amr genotyping.