Casper Jamin
@casperjamin.bsky.social
Medical Molecular Microbiologist in training @ RIVM. Interested in all microbiology but especially the wonderful world of mobile genetic elements
Reposted by Casper Jamin
Voting for the position of Education Officer in the @escmid.bsky.social Fungal Infection Study Group has opened. Please consider voting for me your favorite fungal expert from the Netherlands 💪😉
a pink background with the words " voting is your power "
ALT: a pink background with the words " voting is your power "
media.tenor.com
March 28, 2025 at 11:45 AM
Voting for the position of Education Officer in the @escmid.bsky.social Fungal Infection Study Group has opened. Please consider voting for me your favorite fungal expert from the Netherlands 💪😉
Reposted by Casper Jamin
Battered spouse must stop making abuser so angry, says NATO chief.
He doesn’t mean it, he loves you, you just make him so mad sometimes, maybe you shouldn’t talk so much, you’re tearing this family apart.
He doesn’t mean it, he loves you, you just make him so mad sometimes, maybe you shouldn’t talk so much, you’re tearing this family apart.
Trump-Zelensky meeting: Ukraine must find a way to restore relationship with US, says Nato chief - latest
The Ukrainian president is due to meet Keir Starmer in Downing Street, after the showdown with his US counterpart.
www.bbc.com
March 1, 2025 at 4:25 PM
Battered spouse must stop making abuser so angry, says NATO chief.
He doesn’t mean it, he loves you, you just make him so mad sometimes, maybe you shouldn’t talk so much, you’re tearing this family apart.
He doesn’t mean it, he loves you, you just make him so mad sometimes, maybe you shouldn’t talk so much, you’re tearing this family apart.
Reposted by Casper Jamin
Het aantal schimmelinfecties wereldwijd neemt toe en net als bij bacteriën vormt ook resistentie een probleem. Zien wat ik en andere onderzoekers hier aan doen - kijk dan deze aflevering van Focus terug: -Schadelijke schimmels-
npo.nl/start/serie/...
npo.nl/start/serie/...
Focus | NPO Start
Bij elke nieuwe crisis kijken we hoopvol naar wetenschappers. Petra Grijzen gaat mee met hun zoektocht naar oplossingen voor de problemen van deze tijd. Ze ziet onderzoekers streven, worstelen, falen ...
npo.nl
February 27, 2025 at 10:29 AM
Het aantal schimmelinfecties wereldwijd neemt toe en net als bij bacteriën vormt ook resistentie een probleem. Zien wat ik en andere onderzoekers hier aan doen - kijk dan deze aflevering van Focus terug: -Schadelijke schimmels-
npo.nl/start/serie/...
npo.nl/start/serie/...
Reposted by Casper Jamin
Landmark paper claxon!
'Evaluating the economic and health impact of proactive genomic epidemiology in a hospital setting'
www.medrxiv.org/content/10.1...
Significant savings associated with proactive genomic epidemiology.
'Evaluating the economic and health impact of proactive genomic epidemiology in a hospital setting'
www.medrxiv.org/content/10.1...
Significant savings associated with proactive genomic epidemiology.
February 18, 2025 at 9:27 AM
Landmark paper claxon!
'Evaluating the economic and health impact of proactive genomic epidemiology in a hospital setting'
www.medrxiv.org/content/10.1...
Significant savings associated with proactive genomic epidemiology.
'Evaluating the economic and health impact of proactive genomic epidemiology in a hospital setting'
www.medrxiv.org/content/10.1...
Significant savings associated with proactive genomic epidemiology.
Reposted by Casper Jamin
A study reveals how a major 2011 Dutch hospital outbreak of antibiotic-resistant bacteria showed a changing genetic landscape over a decade. Different OXA-48-like plasmids popped up, but the initial outbreak plasmid didn't stick around, underscoring the changing nature of bacterial resistance.
Diversification of bla OXA-48-harbouring plasmids among carbapenemase-producing Enterobacterales, 11 years after a large outbreak in a general hospital in the Netherlands.
Published in Microbial genomics
doi.org
January 10, 2025 at 8:00 PM
A study reveals how a major 2011 Dutch hospital outbreak of antibiotic-resistant bacteria showed a changing genetic landscape over a decade. Different OXA-48-like plasmids popped up, but the initial outbreak plasmid didn't stick around, underscoring the changing nature of bacterial resistance.
Reposted by Casper Jamin
A position for an MMM-in-training is available in Jeroen Bosch Ziekenhuis:
vacatures.jeroenboschziekenhuis.nl/ad/medisch-m...
vacatures.jeroenboschziekenhuis.nl/ad/medisch-m...
Medisch Moleculair Microbioloog in opleiding - Jeroen Bosch Ziekenhuis Website
36 uur | ’s-Hertogenbosch | € 4.277 - € 5.586 Heb jij een passie voor de medische microbiologie en moleculaire diagnostiek? En wil jij je ontwikkelen tot medisch moleculair microbioloog en een sleute
vacatures.jeroenboschziekenhuis.nl
January 7, 2025 at 3:52 PM
A position for an MMM-in-training is available in Jeroen Bosch Ziekenhuis:
vacatures.jeroenboschziekenhuis.nl/ad/medisch-m...
vacatures.jeroenboschziekenhuis.nl/ad/medisch-m...
Reposted by Casper Jamin
New year, new assemblies!
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
(1/5)
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
(1/5)
Home
A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler
github.com
December 31, 2024 at 11:43 PM
New year, new assemblies!
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
(1/5)
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
(1/5)
Reposted by Casper Jamin
The PopPIPE (github.com/bacpop/PopPIPE) analysis pipeline can be used to subcluster data, create visualisations and run transmission analyses.
Preprint now here: www.biorxiv.org/content/10.1...
Including a case study on nosocomial transmission of vancomycin resistant Enterococcus faecium
Preprint now here: www.biorxiv.org/content/10.1...
Including a case study on nosocomial transmission of vancomycin resistant Enterococcus faecium
GitHub - bacpop/PopPIPE: Population analysis PIPEline 🛠🧬
Population analysis PIPEline 🛠🧬. Contribute to bacpop/PopPIPE development by creating an account on GitHub.
github.com
December 10, 2024 at 9:52 AM
The PopPIPE (github.com/bacpop/PopPIPE) analysis pipeline can be used to subcluster data, create visualisations and run transmission analyses.
Preprint now here: www.biorxiv.org/content/10.1...
Including a case study on nosocomial transmission of vancomycin resistant Enterococcus faecium
Preprint now here: www.biorxiv.org/content/10.1...
Including a case study on nosocomial transmission of vancomycin resistant Enterococcus faecium
Reposted by Casper Jamin
Interesting preprint
'Genomic surveillance of multidrug-resistant organisms based on long-read sequencing'
'long-read sequencing is as accurate, more cost-effective compared to short-read sequencing; is suitable for molecular typing and outbreak analysis'
www.medrxiv.org/content/10.1...
'Genomic surveillance of multidrug-resistant organisms based on long-read sequencing'
'long-read sequencing is as accurate, more cost-effective compared to short-read sequencing; is suitable for molecular typing and outbreak analysis'
www.medrxiv.org/content/10.1...
Genomic surveillance of multidrug-resistant organisms based on long-read sequencing
medRxiv - The Preprint Server for Health Sciences
www.medrxiv.org
February 21, 2024 at 5:11 PM
Interesting preprint
'Genomic surveillance of multidrug-resistant organisms based on long-read sequencing'
'long-read sequencing is as accurate, more cost-effective compared to short-read sequencing; is suitable for molecular typing and outbreak analysis'
www.medrxiv.org/content/10.1...
'Genomic surveillance of multidrug-resistant organisms based on long-read sequencing'
'long-read sequencing is as accurate, more cost-effective compared to short-read sequencing; is suitable for molecular typing and outbreak analysis'
www.medrxiv.org/content/10.1...
Reposted by Casper Jamin
I had fun using pangenome graphs to explore the global epidemiology of blaGES-5-associated integrons 🔎
The next challenge: can we integrate pangenome graphs into the routine surveillance of integrons?
New preprint with #LiamShaw and #NicoleStoesser
www.biorxiv.org/content/10.1...
The next challenge: can we integrate pangenome graphs into the routine surveillance of integrons?
New preprint with #LiamShaw and #NicoleStoesser
www.biorxiv.org/content/10.1...
Global genomic epidemiology of blaGES-5 carbapenemase-associated integrons
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
February 11, 2024 at 10:25 AM
I had fun using pangenome graphs to explore the global epidemiology of blaGES-5-associated integrons 🔎
The next challenge: can we integrate pangenome graphs into the routine surveillance of integrons?
New preprint with #LiamShaw and #NicoleStoesser
www.biorxiv.org/content/10.1...
The next challenge: can we integrate pangenome graphs into the routine surveillance of integrons?
New preprint with #LiamShaw and #NicoleStoesser
www.biorxiv.org/content/10.1...