Brent Pedersen
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brent-p.bsky.social
Brent Pedersen
@brent-p.bsky.social
350 followers 250 following 9 posts
dad
genomics, bioinformatics
rust, nim, python, go, c, bash, awk, js
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brent-p.bsky.social
awesome! it'll take me some time to digest this but this gives me a great start. thank you!
January 27, 2025 at 5:48 PM
brent-p.bsky.social
and thanks for your offer to help!
January 27, 2025 at 5:17 PM
brent-p.bsky.social
I think it might require more interactive help, but here's the error. I understand why, but not how to architect my code to fix.
error[E0599]: the method `indexed_records` exists for struct `Query<'_, &mut Reader<BufReader<File>>>`, but its trait bounds were not satisfied --> src/lib.rs:374:27 | 374 | let q = q.indexed_records(&header).filter_by_region(&region); | ^^^^^^^^^^^^^^^ method cannot be called on `Query<'_, &mut Reader<BufReader<File>>>` due to unsatisfied trait bounds | = note: the following trait bounds were not satisfied: `&mut noodles::noodles_bgzf::Reader<BufReader<File>>: noodles::noodles_bgzf::io::BufRead` `&mut noodles::noodles_bgzf::Reader<BufReader<File>>: noodles::noodles_bgzf::io::Seek`
January 27, 2025 at 5:17 PM
brent-p.bsky.social
also see BITS alg by Ryan Layer and @aaronquinlan.bsky.social academic.oup.com/bioinformati...
November 20, 2024 at 10:59 PM