Brady Johnston
@bradyajohnston.bsky.social
Scientific animator, structural biologist, creator of #MolecularNodes bradyajohnston.github.io/MolecularNodes/
July 8, 2025 at 6:38 PM
checkpoints? collectibles? looks pretty slick
April 29, 2025 at 10:08 AM
checkpoints? collectibles? looks pretty slick
Okay hear me out, what if building your protein model was a first person horror survival experience??
#MolecularNodes #b3d #GeometryNodes 🧪
#MolecularNodes #b3d #GeometryNodes 🧪
April 29, 2025 at 9:43 AM
Okay hear me out, what if building your protein model was a first person horror survival experience??
#MolecularNodes #b3d #GeometryNodes 🧪
#MolecularNodes #b3d #GeometryNodes 🧪
Death to default PyMol color schemes (made with MN)
April 16, 2025 at 8:19 AM
Death to default PyMol color schemes (made with MN)
So who is going to be ⭐1000? #MolecularNodes
April 10, 2025 at 11:03 AM
So who is going to be ⭐1000? #MolecularNodes
Time to start posting regular protein renders again, 8Y48 from the @rcsbpdb.bsky.social weekly release, using #MolecularNodes #b3d #GeometryNodes #SciArt 🧪
February 24, 2025 at 8:22 AM
Time to start posting regular protein renders again, 8Y48 from the @rcsbpdb.bsky.social weekly release, using #MolecularNodes #b3d #GeometryNodes #SciArt 🧪
December 5, 2024 at 12:30 PM
More material tests, this time extra squishy. MD trajectory that shows an aspirin ligand coming out of hibernation for spring (undbinding) #b3d #MolecularNodes #GeometryNodes #SciArt
December 2, 2024 at 9:25 AM
More material tests, this time extra squishy. MD trajectory that shows an aspirin ligand coming out of hibernation for spring (undbinding) #b3d #MolecularNodes #GeometryNodes #SciArt
A quick molecule of the month render for November's Malaria Parasite PTEX (pdb101.rcsb.org/motm/299) using #b3d and #MolecularNodes
#GeometryNodes #SciArt
#GeometryNodes #SciArt
December 1, 2024 at 5:52 AM
A quick molecule of the month render for November's Malaria Parasite PTEX (pdb101.rcsb.org/motm/299) using #b3d and #MolecularNodes
#GeometryNodes #SciArt
#GeometryNodes #SciArt
Sydney friends! Thanks to scheduling it turns out I have a totally free day tomorrow (Friday) if anyone wants to say hello
November 28, 2024 at 1:40 AM
Sydney friends! Thanks to scheduling it turns out I have a totally free day tomorrow (Friday) if anyone wants to say hello
Some more testing for the position averaging of trajectories using #MolecularNodes in #b3d, makes a much more visually watchable movie compared to raw trajectory data #GeometryNodes #MolecularDynamics
November 26, 2024 at 10:09 AM
Some more testing for the position averaging of trajectories using #MolecularNodes in #b3d, makes a much more visually watchable movie compared to raw trajectory data #GeometryNodes #MolecularDynamics
Just got some nice positional averaging inside of #MolecularNodes. Smooth out trajectories across frames when visualising, add subframes, also takes into account periodic boundary crossing so you don't have zooming lipids #b3d #GeometryNodes #GlycoTime #SciArt
November 25, 2024 at 12:38 PM
Just got some nice positional averaging inside of #MolecularNodes. Smooth out trajectories across frames when visualising, add subframes, also takes into account periodic boundary crossing so you don't have zooming lipids #b3d #GeometryNodes #GlycoTime #SciArt
Playing with mucins for #glycotime. Trajectory from @fionachembot.bsky.social and @rommieamaro.bsky.social #b3d #MolecularNodes #GeometryNodes #SciArt
November 21, 2024 at 12:36 AM
Playing with mucins for #glycotime. Trajectory from @fionachembot.bsky.social and @rommieamaro.bsky.social #b3d #MolecularNodes #GeometryNodes #SciArt
This is using GN so yeah caching is handled by Blender and you can scrub the timeline. This just a much more simplified particle sim that is activated at some point, the simulates / adds noise progressively. Doesn't take into account complex shapes but maybe something I can hand of to the GPU
November 20, 2024 at 9:08 AM
This is using GN so yeah caching is handled by Blender and you can scrub the timeline. This just a much more simplified particle sim that is activated at some point, the simulates / adds noise progressively. Doesn't take into account complex shapes but maybe something I can hand of to the GPU
November 20, 2024 at 8:17 AM
Just a daily #MolecularNodes test render. Trying out different color spaces (got OKLab working and it looks great).
#b3d #GeometryNodes #SciArt 🧪 🧬🧶
#b3d #GeometryNodes #SciArt 🧪 🧬🧶
November 19, 2024 at 8:00 AM
Just a daily #MolecularNodes test render. Trying out different color spaces (got OKLab working and it looks great).
#b3d #GeometryNodes #SciArt 🧪 🧬🧶
#b3d #GeometryNodes #SciArt 🧪 🧬🧶
Now have protein structures importing and simulating on the GPU. Backbone only and currently structure is entirely spring based, but performance is incredible #b3d #GeometryNodes #MolecularNodes
November 14, 2024 at 9:19 AM
Now have protein structures importing and simulating on the GPU. Backbone only and currently structure is entirely spring based, but performance is incredible #b3d #GeometryNodes #MolecularNodes
The performance improves a lot when we aren't doing 500,000 particles. Lots of potential for simulating proteins / cellular landscapes interactively...
November 13, 2024 at 8:31 AM
The performance improves a lot when we aren't doing 500,000 particles. Lots of potential for simulating proteins / cellular landscapes interactively...
Manged to get NVIDIA's GPU physics solver Warp running interactively inside of Blender. This is 500,000 particles simulating ON THE GPU and taking live inputs from the viewport #b3d #GeometryNodes
November 13, 2024 at 8:29 AM
Manged to get NVIDIA's GPU physics solver Warp running interactively inside of Blender. This is 500,000 particles simulating ON THE GPU and taking live inputs from the viewport #b3d #GeometryNodes
November 8, 2024 at 3:56 AM
November 7, 2024 at 3:19 AM
I've been trying to get more comfortable with matrices, selectively folding & unfolding some proteins with the power of math #MolecularNodes #b3d
also hello again bsky
also hello again bsky
October 18, 2024 at 3:13 AM
I've been trying to get more comfortable with matrices, selectively folding & unfolding some proteins with the power of math #MolecularNodes #b3d
also hello again bsky
also hello again bsky
Heyo bsky, have been meaning to officially start posting here (videos aren't supported???!?!?!?!?!?!?) but my repo just hit quite the milestone
October 3, 2023 at 6:53 AM
Heyo bsky, have been meaning to officially start posting here (videos aren't supported???!?!?!?!?!?!?) but my repo just hit quite the milestone