Andrei Papkou
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biobarkologist.bsky.social
Andrei Papkou
@biobarkologist.bsky.social
Evolutionary biologist
I am grateful to my collaborators @jaescudero.bsky.social
and Lucia Garcia-Pastor, my colleagues at the Anrdeas Wagner group. I am grateful to the reviewers for their helpful feedback and the Science production team for choosing a vivid illustration of a rugged landscape for the cover
November 24, 2023 at 1:38 PM
Interestingly, all high fitness peaks (27Asp and 27Glu) essentially share one enormous basin of attraction. This means that the evolving populations have access to multiple peaks, which makes it difficult to predict evolutionary outcomes.
November 24, 2023 at 1:36 PM
It turned out that most genotypes have a large number of paths leading to high fitness peaks, and very few paths leading to low fitness peaks. Consequently, high peaks are evolutionary accessible to most genotypes (i.e. have large basins of attraction).
November 24, 2023 at 1:36 PM
This result is robust against different population genetics assumptions
November 24, 2023 at 1:35 PM
Given the presence of multiple low and high peaks, we considered this landscape as rugged and expected that adaptive evolution would be constrained. However, our simulations showed the opposite. High fitness peaks were reached in 77% of simulations via short adaptive paths
November 24, 2023 at 1:34 PM
74 peaks have high fitness. All of them have negatively charged amino acids Asp or Glu at the conserved DHFR position 27. Otherwise, high fitness peaks have different amino acids at other amino acid positions
November 24, 2023 at 1:33 PM
The resulting fitness landscape has >500 fitness peaks, most of which are low fitness peaks.
November 24, 2023 at 1:33 PM
We took great care to validate our fitness measurements
November 24, 2023 at 1:32 PM
We measured fitness at the presence of the antibiotic using a mass selection experiment and deep sequencing.
November 24, 2023 at 1:31 PM