Benjamin Cole
@b-coli.bsky.social
Plant biologist interested in functional genomics, bioinformatics, environmental stress adaptation, beer making
Reposted by Benjamin Cole
New Article: "Recruitment, rewiring and deep conservation in flowering plant gene regulation" rdcu.be/ew9ig
With N&V: "Gene regulation: A binding agreement" rdcu.be/ew9jn
Large-scale study of transcr. factor binding across multiple flowering plant species.
With N&V: "Gene regulation: A binding agreement" rdcu.be/ew9jn
Large-scale study of transcr. factor binding across multiple flowering plant species.
July 21, 2025 at 11:48 AM
New Article: "Recruitment, rewiring and deep conservation in flowering plant gene regulation" rdcu.be/ew9ig
With N&V: "Gene regulation: A binding agreement" rdcu.be/ew9jn
Large-scale study of transcr. factor binding across multiple flowering plant species.
With N&V: "Gene regulation: A binding agreement" rdcu.be/ew9jn
Large-scale study of transcr. factor binding across multiple flowering plant species.
Looks like a really cool resource!
Single-Nucleus Transcriptomics Reveals How Tissue Context Shapes the Circadian Transcriptome of the Arabidopsis Leaf https://www.biorxiv.org/content/10.1101/2025.06.12.659411v1
June 16, 2025 at 1:59 PM
Looks like a really cool resource!
Reposted by Benjamin Cole
We have a postdoc position that just opened up in the Brady lab on reprogramming tomato root system architecture in response to changes in nutrient availability - please consider applying! recruit.ucdavis.edu/JPF07095
Postdoctoral Researcher- Brady Lab
University of California, Davis is hiring. Apply now!
recruit.ucdavis.edu
April 19, 2025 at 2:15 PM
We have a postdoc position that just opened up in the Brady lab on reprogramming tomato root system architecture in response to changes in nutrient availability - please consider applying! recruit.ucdavis.edu/JPF07095
Reposted by Benjamin Cole
The second Plant Cell Identity webinar by PCA is coming next Tuesday (10th December)! It will be my pleasure the moderate the exciting talks from @rachelmshahan.bsky.social and Geoff Schiebinger.
If you haven't signed up for the series yet, you can do so here:
bit.ly/PCAPCI_Webinar
If you haven't signed up for the series yet, you can do so here:
bit.ly/PCAPCI_Webinar
December 6, 2024 at 8:24 AM
The second Plant Cell Identity webinar by PCA is coming next Tuesday (10th December)! It will be my pleasure the moderate the exciting talks from @rachelmshahan.bsky.social and Geoff Schiebinger.
If you haven't signed up for the series yet, you can do so here:
bit.ly/PCAPCI_Webinar
If you haven't signed up for the series yet, you can do so here:
bit.ly/PCAPCI_Webinar
Reposted by Benjamin Cole
Exaptation of ancestral cell-identity networks enables C4 photosynthesis www.nature.com/articles/s41...
New from the Ecker lab in collaboration with the Hibberd lab. Congrats all!
New from the Ecker lab in collaboration with the Hibberd lab. Congrats all!
Exaptation of ancestral cell-identity networks enables C4 photosynthesis - Nature
Single-nucleus RNA-sequencing and chromatin-accessibility analyses in rice (a C3 plant) and sorghum (a C4 plant) provide insight into how C4 photosynthesis evolved in bundle-sheath cells, revealing th...
www.nature.com
November 20, 2024 at 4:51 PM
Exaptation of ancestral cell-identity networks enables C4 photosynthesis www.nature.com/articles/s41...
New from the Ecker lab in collaboration with the Hibberd lab. Congrats all!
New from the Ecker lab in collaboration with the Hibberd lab. Congrats all!
I’m so very sad to learn that my mentor, Joanne Chory has passed away. She was a brilliant scientist, kind and insightful mentor, and an inspiration to so many.
www.salk.edu/news-release...
www.salk.edu/news-release...
Joanne Chory, Salk Institute professor and pioneering plant biologist, dies at age 69 - Salk Institute for Biological Studies
LA JOLLA—Salk Professor Joanne Chory, one of the world’s preeminent plant biologists who led the charge to mitigate climate change with plant-based solutions, died on November 12, 2024, at the age of ...
www.salk.edu
November 14, 2024 at 2:20 AM
I’m so very sad to learn that my mentor, Joanne Chory has passed away. She was a brilliant scientist, kind and insightful mentor, and an inspiration to so many.
www.salk.edu/news-release...
www.salk.edu/news-release...
Reposted by Benjamin Cole
Coexpression enhances cross-species integration of scRNA-seq across diverse plant species https://www.biorxiv.org/content/10.1101/2023.11.28.569145v1
Coexpression enhances cross-species integration of scRNA-seq across diverse plant species https://www.biorxiv.org/content/10.1101/2023.11.28.569145v1
Single-cell RNA sequencing is increasingly used to investigate cross-species differences driven by g
www.biorxiv.org
November 30, 2023 at 7:05 PM
Coexpression enhances cross-species integration of scRNA-seq across diverse plant species https://www.biorxiv.org/content/10.1101/2023.11.28.569145v1
Does earthquake bluesky work the same as earthquake Twitter?
October 28, 2023 at 1:41 AM
Does earthquake bluesky work the same as earthquake Twitter?
Reposted by Benjamin Cole
Plant scientist Blake Meyers named as new director of UC Davis Genome Center
www.ucdavis.edu/news/uc-davi...
www.ucdavis.edu/news/uc-davi...
August 29, 2023 at 9:11 PM
Plant scientist Blake Meyers named as new director of UC Davis Genome Center
www.ucdavis.edu/news/uc-davi...
www.ucdavis.edu/news/uc-davi...
Reposted by Benjamin Cole
[Reposting our 🧪paper threads to preserve them]
Our labs' first PDF-formatted paper is out!
With Adam Deustchbauer, we adapted #RBTnSeq to representatives of the #Ralstonia solanacearum species complex.
Goal: identify shared and strain-specific traits that pathogens use across their life cycles.
Our labs' first PDF-formatted paper is out!
With Adam Deustchbauer, we adapted #RBTnSeq to representatives of the #Ralstonia solanacearum species complex.
Goal: identify shared and strain-specific traits that pathogens use across their life cycles.
August 30, 2023 at 1:41 PM
[Reposting our 🧪paper threads to preserve them]
Our labs' first PDF-formatted paper is out!
With Adam Deustchbauer, we adapted #RBTnSeq to representatives of the #Ralstonia solanacearum species complex.
Goal: identify shared and strain-specific traits that pathogens use across their life cycles.
Our labs' first PDF-formatted paper is out!
With Adam Deustchbauer, we adapted #RBTnSeq to representatives of the #Ralstonia solanacearum species complex.
Goal: identify shared and strain-specific traits that pathogens use across their life cycles.