Aurélien Boyé
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aurelien-boye.bsky.social
Aurélien Boyé
@aurelien-boye.bsky.social
Benthic ecologist at @ifremer.bsky.social🐬

• Using numerical ecology to understand and predict marine coastal biodiversity, focusing on the role of foundation species like seagrass 🌱 and maerl 🪸

• Trait-based ecology, community trajectory, ML, Rstats, ☕
Reposted by Aurélien Boyé
October 16, 2025 at 7:30 AM
Reposted by Aurélien Boyé
Please pass along - postdoc position! with our working group on #FunctionalTraits and rarity. This is part of the FREE (Functional Rarity in Ecology and Evolution) working group led by Cyrille Violle in Montpellier France 🧪🌐🌾 emploi.cnrs.fr/Offres/CDD/U...
Portail Emploi CNRS - Offre d'emploi - Offre de post-doctorat en écologie (H/F)
emploi.cnrs.fr
June 17, 2025 at 8:40 PM
Reposted by Aurélien Boyé
🚨 📣 Happy to share this new paper on World Seagrass Day 🌱🌊🌱🌊

Community trajectory analyses sheds light on regional and local dynamics of 2️⃣ seagrass species along the 🇫🇷 coast
#MarineEcology 🧪

peercommunityjournal.org/articles/10....

@aurelien-boye.bsky.social
@ofbiodiversite.bsky.social
Regional and local variability in the morphometric traits of two emblematic seagrass species (Zostera marina and Zostera noltei) along the French coast
peercommunityjournal.org
March 1, 2025 at 1:47 PM
Reposted by Aurélien Boyé
🌍 Understanding habitat states & transitions is key for conservation!

🏝️ Helps track ecosystem shifts from climate change

🛑 Detects early warning signs of degradation (e.g., kelp loss → urchin barrens).
February 13, 2025 at 10:00 AM
Reposted by Aurélien Boyé
🌍 With our data-driven standardized way to classify & monitor marine habitats, what did we find?

🏝️ 17 distinct habitat states, including kelp forests, coral reefs & transitional zones

📉 Our pipeline captures fine-scale ecological changes over time
February 13, 2025 at 10:00 AM
Reposted by Aurélien Boyé
This study wouldn’t be possible without citizen scientists! 🌍🌊

👩‍🔬 Reef Life Survey divers collected 6554 transects worldwide
📸 Standardized photoquadrat sampling ensured consistency
📊 It enabled us to track habitat transitions over time
February 13, 2025 at 10:00 AM
Reposted by Aurélien Boyé
Machine learning models like UMAP & HDBSCAN are powerful, but they’re often hard to interpret.

So, we used SHAP to:
📌 Identify which features drive cluster formation
📌 Uncover non-linear interactions in benthic ecosystems
📌 Improve ecological interpretability of results
February 13, 2025 at 10:00 AM
Reposted by Aurélien Boyé
We used better methods: UMAP (for dimension reduction) & HDBSCAN (for clustering).

✅ Captures complex ecological structures
✅ Finds clusters of varying shapes & sizes
✅ Filters noise instead of forcing data into clusters
February 13, 2025 at 10:00 AM
Reposted by Aurélien Boyé
Clustering is widely used in ecology to define community types, habitat states & biodiversity patterns. But common methods used in ecology have major drawbacks. (See this excellent video of @JohnDataHealy
youtu.be/dGsxd67IFiU?...)
HDBSCAN, Fast Density Based Clustering, the How and the Why - John Healy
YouTube video by PyData
youtu.be
February 13, 2025 at 10:00 AM
Reposted by Aurélien Boyé
🚀 New paper alert! We used a UMAP-HDBSCAN pipeline to classify & track benthic habitat states at a global scale using citizen science data from Reef Life Survey ! 🌍🏝️

🔗 Read it here: doi.org/10.1016/j.ec...

#MarineScience #Ecology #CitizenScience #MachineLearning
Redirecting
doi.org
February 13, 2025 at 10:00 AM
Check this out ! It's all about seagrass, trajectory analysis and trait variability ! Well done Elise and co 🌱
@aec13.bsky.social @ifremer.bsky.social
A new #preprint #OpenScience #PeerReview by @PCI_Ecology: Élise Lacoste et al (2024) Regional and local variability in the morphometric traits of two emblematic seagrass species (Zostera marina and Zostera noltei) along the French coast. https://doi.org/10.5281/zenodo.10427767 🔽
Regional and local variability in the morphometric traits of two emblematic seagrass species (Zostera marina and Zostera noltei) along the French coast
Abstract Zostera marina and Zostera noltei are two foundation species that play a crucial role in the functioning of coastal ecosystems. They occur in a wide range of environmental conditions over a large geographical area in the northern hemisphere. The aim of this study was to investigate the scales of variability in the dynamics of these two species in relation to environmental conditions in four sites along the French coasts. We used community trajectory analysis, a multivariate statistical approach that allows quantitative measures and comparisons of ecosystem temporal trajectories. The results show an effect of site position and tidal regime on the seasonal dynamics of the two species. Populations from the southernmost microtidal site showed a seasonal stability in their morphometric traits and a good resistance to present-day climatic conditions. In the meso- and macrotidal regime sites, hydrodynamic conditions and light have led to very different ecological strategies. On the one hand, high tidal currents increased shoot density and root biomass, while on the other hand, low light and less current favoured the development of long leaves to optimise photosynthesis. Finally, variations in meadow development was also observed at the local scale, which requires further investigation to identify the specific drivers. Our discussion suggests that special attention should be paid to interpreting the dynamics of these species according to the scale of observation, and that this diversity of variation scales should be taken into account in conservation measures. In a global context of seagrass bed decline, our study suggests some avenues of research to improve our understanding of seagrass species ecology in order to properly assess the state of coastal waters.
zenodo.org
January 31, 2025 at 9:01 PM
Reposted by Aurélien Boyé
Well done Elise! 🙌 🧪 🌱🇫🇷 a great #broadscale seagrass study & happy memories of lockdown winter 🤿 diving in the Morbihan gulf for sample collecting. Under the snow in 5 degree 💦 🥶 @aurelien-boye.bsky.social @ifremer.bsky.social #CTAanalysis
A new #preprint #OpenScience #PeerReview by @PCI_Ecology: Élise Lacoste et al (2024) Regional and local variability in the morphometric traits of two emblematic seagrass species (Zostera marina and Zostera noltei) along the French coast. https://doi.org/10.5281/zenodo.10427767 🔽
Regional and local variability in the morphometric traits of two emblematic seagrass species (Zostera marina and Zostera noltei) along the French coast
Abstract Zostera marina and Zostera noltei are two foundation species that play a crucial role in the functioning of coastal ecosystems. They occur in a wide range of environmental conditions over a large geographical area in the northern hemisphere. The aim of this study was to investigate the scales of variability in the dynamics of these two species in relation to environmental conditions in four sites along the French coasts. We used community trajectory analysis, a multivariate statistical approach that allows quantitative measures and comparisons of ecosystem temporal trajectories. The results show an effect of site position and tidal regime on the seasonal dynamics of the two species. Populations from the southernmost microtidal site showed a seasonal stability in their morphometric traits and a good resistance to present-day climatic conditions. In the meso- and macrotidal regime sites, hydrodynamic conditions and light have led to very different ecological strategies. On the one hand, high tidal currents increased shoot density and root biomass, while on the other hand, low light and less current favoured the development of long leaves to optimise photosynthesis. Finally, variations in meadow development was also observed at the local scale, which requires further investigation to identify the specific drivers. Our discussion suggests that special attention should be paid to interpreting the dynamics of these species according to the scale of observation, and that this diversity of variation scales should be taken into account in conservation measures. In a global context of seagrass bed decline, our study suggests some avenues of research to improve our understanding of seagrass species ecology in order to properly assess the state of coastal waters.
zenodo.org
January 31, 2025 at 8:51 PM
Reposted by Aurélien Boyé
### NEW FUNDING OPPORTUNITY ###

Global Joint Synthesis Call

"𝗜𝗻𝘁𝗲𝗿𝗮𝗰𝘁𝗶𝗼𝗻𝘀 𝗯𝗲𝘁𝘄𝗲𝗲𝗻 𝗕𝗶𝗼𝗱𝗶𝘃𝗲𝗿𝘀𝗶𝘁𝘆 𝗮𝗻𝗱 𝗖𝗹𝗶𝗺𝗮𝘁𝗲 𝗖𝗵𝗮𝗻𝗴𝗲"

Funding of:

➡️ Working groups
➡️ Postdocs
@several synthesis centres/initiatives🔥❤️😍

PLEASE SPREAD WIDELY! THX!

www.idiv.de/research/sdi...
Calls | iDiv
www.idiv.de
December 2, 2024 at 6:54 AM
Reposted by Aurélien Boyé
I am looking for a PhD student to start in fall of 2025 at MSU. Potential topics include trait-based approaches to plankton community resilience, temperature effects on communities, harmful algal blooms and many others. Please get in touch if interested. More info: www.kl-lab.group.
Klausmeier-Litchman Lab
Welcome to the Klausmeier-Litchman lab! We study empirical and theoretical community ecology, biodiversity and climate change, focusing on phytoplankton, other microbes and general theory. We use obse...
www.kl-lab.group
November 26, 2024 at 6:48 PM
Reposted by Aurélien Boyé
A starter pack for people studying biodiversity and ecosystem functioning at the mesoscale.

#metapopulations #metacommunities #metaecosystems

Reply to be added, and SHARE to spread !

I missed many people, please help me hunting the metacommunists on bluesky !

go.bsky.app/3v5o8nf

🧪🌍🦤🦑🪴
November 19, 2024 at 8:48 AM
Reposted by Aurélien Boyé
The Faculty of Science at Stockholm University is recruiting up to three Assistant Professors in Biodiversity to tackle the critical global issue of biodiversity loss caused by human-driven factors such as climate change, habitat alteration and pollution.

www.su.se/department-o...
Faculty of Science is recruiting Assistant Professors in Biodiversity - Department of Ecology, Environment and Plant Sciences
Faculty of Science is recruiting Assistant Professors in Biodiversity - Department of Ecology, Environment and Plant Sciences
www.su.se
November 22, 2024 at 4:33 PM
Reposted by Aurélien Boyé
📢Fully-funded PhD scholarship available for underrepresented ethnic groups within UCL Earth Sciences.

Please get in touch if you are interested in:
- Corals🪸
- Marine biodiversity📈
- Macroecology 🌏
- Conservation Palaeobiology🐚
More info (inc. eligibility):
www.ucl.ac.uk/earth-scienc...
UCL Earth Sciences Ph.D. scholarship
Applications are open to the UCL Earth Sciences Ph.D. scholarship. The scholarship is meant to support underrepresented groups at the Ph.D. level. The deadline for applications is on January 23rd 2025
www.ucl.ac.uk
November 22, 2024 at 12:20 PM
Reposted by Aurélien Boyé
Reposting for weekend readers:

🧪 🧪 We are hiring a new limnology professor at UQAM! Come join us in the GRIL in Montreal. Posting is below / Nous embauchons un nouveau prof en limnologie à l'UQAM! Rejoignez-vous à nous dans le GRIL 🧪 🧪 --> bio.uqam.ca/wp-content/u...
Please re-post.
bio.uqam.ca
November 23, 2024 at 12:46 PM
Reposted by Aurélien Boyé
If you are looking for a post doc fellowship in France, holding PhD less than 5 yrs, and interested in climate change, ecology, you should apply campusfrance.org/en/mopga-2025
MOPGA 2025: Visiting Fellowship Program for early career researchers | Campus France
campusfrance.org
November 21, 2024 at 3:01 PM
Reposted by Aurélien Boyé
Registration is now OPEN! #ITRS2025 here we go! 🐌🪼🐟🦀🦑🐙🌱🌱🐚💦🌊🌊🌍 #MarineLife #RockyShores
🙌 thrilled to announce that registration for #ITRS2025 is now open! 👉https://itrs-home.org/register.html 🦀🪸🐚🦦🪨🌱🍯🪱🦪🌊 Please signup to our newsletter and share this post 🙏🏼
@nessocon.bsky.social @dansmale1.bsky.social @rubygeorge.bsky.social @amcquatters-gollop.bsky.social @trinebekkby.bsky.social
November 21, 2024 at 11:32 AM
Reposted by Aurélien Boyé
🙌 thrilled to announce that registration for #ITRS2025 is now open! 👉https://itrs-home.org/register.html 🦀🪸🐚🦦🪨🌱🍯🪱🦪🌊 Please signup to our newsletter and share this post 🙏🏼
@nessocon.bsky.social @dansmale1.bsky.social @rubygeorge.bsky.social @amcquatters-gollop.bsky.social @trinebekkby.bsky.social
November 21, 2024 at 10:53 AM