Antoine Koehl
antoinekoehl.bsky.social
Antoine Koehl
@antoinekoehl.bsky.social
Structural Biologist turned computational biologist @UCBerkeley. Former Miller Fellow
Reposted by Antoine Koehl
We are excited to share GPN-Star, a cost-effective, biologically grounded genomic language modeling framework that achieves state-of-the-art performance across a wide range of variant effect prediction tasks relevant to human genetics.
www.biorxiv.org/content/10.1...
(1/n)
September 22, 2025 at 5:29 AM
Reposted by Antoine Koehl
Guide your favorite protein generative model with experimental data? Meet ProteinGuide - a method to condition pre-trained models on properties without retraining. We validated it both in silico by guiding ProteinMPNN and ESM3 on 3 tasks and in vitro by engineering base editors.
May 31, 2025 at 3:46 PM
Reposted by Antoine Koehl
What's better than 1 deep mutational scanning (DMS) library? 2! In a new pre-print @brittneywthornton.bsky.social and @rfw.bsky.social et al. map the mutational landscape of ISDra2 TnpB protein and reRNA and leverage these datasets to engineer highly active variants (1/9)
February 26, 2025 at 6:44 PM