Ani Deshpande Lab
anideshpande.bsky.social
Ani Deshpande Lab
@anideshpande.bsky.social
Assoc. Prof. at SBP, La Jolla. Epigenetics, Pediatric Cancers, Leukemia, Stem Cells. LinkedIn: http://tinyurl.com/4yn4tj98
Full Episode here ! youtu.be/TEhPlF29yl4
E5 Diabetes - Sensing Sugar Spikes
YouTube video by Discovery Dialogues
youtu.be
September 20, 2025 at 12:54 AM
I also experiment with a CGM and share opinions on what these devices can tell us and what they can't. #discoverydialogues #diabetes #cgm #podcast #medicalhistory #Type1Diabetes #type2diabetes
September 20, 2025 at 12:53 AM
From a Holocaust survivor to one of the most prolific innovators in recent times, Heller's story is absolutely incredible.
September 20, 2025 at 12:53 AM
This project was led by a highly talented grad student Rema Iyer with help from others in the lab esp. Anagha Deshpande, and fantastic collaborators at @sbpdiscovery.bsky.social including Ben Finlay, @ Vuori Lab Gerard Brien (Edinburgh), Hiromi Wetterstein (UCSD) and @alice.soragnilab.com @ (UCLA).
August 18, 2025 at 9:18 AM
Finally, TAK-981 robustly suppressed tumor growth in xenograft models, reducing tumor growth, decreasing SS18::SSX protein levels, and lower cellularity. This study strongly indicates SUMO2 inhibition as an effective therapeutic strategy against synovial sarcoma in vivo.
August 18, 2025 at 9:18 AM
Prior studies (McBride et al., Benabdallah N. et al., Boulay G. et al.,) have demonstrated H2AK119ub activation by SS18::SSX fusions. We observed that SUMO2 inhibition substantially reduced H2AK119ub, esp. at fusion target sites corresponding with fusion loss.
August 18, 2025 at 9:18 AM
These results were borne out by CUT&Tag which showed strongly diminished SS18::SSX fusion protein on chromatin after SUMO2 inhibition using TAK-981.
August 18, 2025 at 9:18 AM
Surprisingly, SUMO2 inhibition did not just reverse downstream targets, but also SS18::SSX protein levels themselves. Both shRNA and TAK-981 treatments lowered fusion protein levels across different variants (SSX1 and SSX2), establishing SUMO2 as a regulator of the fusion itself.
August 18, 2025 at 9:18 AM
This was a surprise - reminiscent of candidates that target the fusion protein itself - or immediately proximal targets. Excited by this, we tested whether SUMO2 inhibition targets the fusion protein.
August 18, 2025 at 9:18 AM
Fusion activated oncogenic targets (e.g., HOXA10, SUZ12, TYMS) were down-regulated, while fusion-repressed genes such (e.g., KLF4, GADD45B) were derepressed upon SUMO2 inhibition.
August 18, 2025 at 9:18 AM
Surprisingly, transcriptomic studies revealed that SUMO2 inhibition showed a dramatic reversal of the transcriptional program of SS18::SSX fusions described in Jerby-Arnon L, et al. (Regev Lab).
August 18, 2025 at 9:18 AM
Genetic knockdown of SUMO2 had similar effects
August 18, 2025 at 9:18 AM
We were also excited about SUMO2 because of the availability of TAK-981, a potent, clinical-stage SUMO2 inhibitor which strongly suppressed growth of synovial sarcoma lines, increased apoptosis, and dramatically reduced colony-forming ability of synovial sarcoma cells at low nM
August 18, 2025 at 9:18 AM
We then conducted targeted CRISPR screens in vitro and in vivo using synovial sarcoma cells, and SUMO2 emerged as one of the strongest dependencies in both - validating DepMap predictions. Since SUMO2 was also a SS18::SSX fusion target, was prioritized for further studies.
August 18, 2025 at 9:18 AM
So, we began with the dependency maps dataset (DepMap) to ask: which genes are selectively essential for synovial sarcoma compared to other cancers?

In addition to expected genes (SS18, SSX, BRD9), one pathway jumped out: SUMOylation. And right at the core of this was SUMO2.
August 18, 2025 at 9:18 AM
A few years ago, we got interested in Synovial Sarcoma - an aggressive, difficult-to-treat cancer. There is a single fusion protein - the SS18::SSX fusion - that drives this malignancy, but there isn’t much known about actionable vulnerabilities in this disease.
August 18, 2025 at 9:18 AM
In this Episode, Pamela Itkin-Ansari and I explore a chemical reaction that links golden toast and roasted potatoes to chronic disease, and uncover the astonishing story of a breakthrough medical test born in a place no one saw coming. #diabetes #A1C #HbA1c #hemoglobin #glycation #MaillardReaction
August 11, 2025 at 6:00 PM