Ali Rifat
ali-rifat.bsky.social
Ali Rifat
@ali-rifat.bsky.social
MD and neuroscientist @ChariteBerlin | interested in microglial physiology
This study reflects the dedication of a great team over many years. I am sincerely thankful to my co-first author Tom Bickel, to our PI Christian Madry and to all collaborators who brought their expertise and care to this work.

Read the full story here: www.science.org/doi/10.1126/...
October 25, 2025 at 3:24 PM
Finally, we asked whether these mechanisms translate to human microglia. Using a mouse model with xenotransplanted human microglia and human brain tissue, we confirmed that CLIC1 regulates microglial morphodynamics and inflammatory signaling across species.
October 25, 2025 at 3:24 PM
If not as an ion channel, how does CLIC1 control motility and ramification? CLIC1 can also exist in a soluble cytosolic form. In this state, it interacts with actin and ERM family proteins, and likely serves as a scaffold protein that links the cytoskeleton to the plasma membrane.
October 25, 2025 at 3:24 PM
To test if CLIC1 acts as a Cl⁻ channel, we repeated our experiments in Cl⁻-free solutions. Surprisingly, depleting Cl⁻ did not alter the effect of CLIC1 blockade on motility and ramification. So, contrary to its name, CLIC1 does not act as a Cl⁻ channel to regulate this.
October 25, 2025 at 3:24 PM
To test wheter our initial effects could be explained by CLIC1, we blocked it using the small molecule IAA94 and an anti-CLIC1 antibody. The result was clear: CLIC1 blockade reduced microglial ramification and process motility, thereby reducing the surveillance of the brain.
October 25, 2025 at 3:24 PM
To identify candidate genes, we turned to scRNA sequencing, and found one gene prominently standing out: CLIC1, which encodes the Chloride Intracellular Channel 1. It was highly expressed in both mouse and human microglia but barely detectable in other brain cells.
October 25, 2025 at 3:24 PM
In our experiments, broad-spectrum Cl⁻ channel blockers profoundly impaired microglial motility and process ramification. Yet patch-clamp recordings revealed no tonic Cl⁻ conductance in the plasma membrane. We considered two options: either a nonspecific drug effect or an intracellular Cl⁻ channel.
October 25, 2025 at 3:24 PM
Microglia are the brain’s most dynamic cells, constantly extending and retracting their processes to monitor the parenchyma and respond to potential danger with inflammatory signaling.

Our new study in @ScienceAdvances @science.org explores how these functions are regulated.
October 25, 2025 at 3:24 PM