VIAMD
@viamd.bsky.social
VIAMD is an interactive analysis tool for MD. https://github.com/scanberg/viamd. Article: https://pubs.acs.org/doi/10.1021/acs.jcim.3c01033. Wiki: https://github.com/scanberg/viamd/wiki Tutorial playlist: https://bit.ly/4aRsPrh #compchem
Pinned
VIAMD
@viamd.bsky.social
· Apr 7
VIAMD - Quick Overview
YouTube video by mathieu linares
youtu.be
Hi #compchem people, there is a playlist of tutorial videos for VIAMD available here: www.youtube.com/playlist?lis.... The first one is just a quick overview of the software: youtu.be/7X4pMv1Hf-4?.... Following videos in the thread will describe specific features of VIAMD🧵
#compchem You can use viamd to read and analyze @veloxchem.bsky.social output file. You can read more about it following this link: github.com/scanberg/via...
Check out our latest paper! #compchem You will find descriptions and short examples of how VeloxChem integrates quantum chemistry with classical methods.
doi.org/10.1021/acs....
doi.org/10.1021/acs....
VeloxChem Quantum–Classical Interoperability for Modeling of Complex Molecular Systems
Being a program written primarily in Python that strictly adheres to modern object-oriented software engineering and parallel programming practices, VeloxChem is shown to be suitable for the development of (semi)automatized workflows that extend its scope from first-principles quantum chemical purism to hybrid quantum–classical interoperability and some degree of semiempiricism. Methods are presented for building complex systems such as metal–organic frameworks, constructing molecular mechanics and interpolation mechanics force fields, conformer searches, system solvation, determining free energies of solvation, and determining free energy profiles of reaction pathways using the empirical valence bond method. The implementations are made intuitive with opportunities for interactive plotting and 3D molecular structure illustrations through the use of Jupyter notebooks.
doi.org
August 7, 2025 at 8:17 AM
#compchem You can use viamd to read and analyze @veloxchem.bsky.social output file. You can read more about it following this link: github.com/scanberg/via...
You can now save Ultra HD (8k) resolution screenshot in VIAMD, with or without the GUI. Here illustrated on a visualization of a Moebius ring calculated with @veloxchem.bsky.social. #compchem
July 1, 2025 at 9:44 AM
You can now save Ultra HD (8k) resolution screenshot in VIAMD, with or without the GUI. Here illustrated on a visualization of a Moebius ring calculated with @veloxchem.bsky.social. #compchem
Reposted by VIAMD
See you there. I'll be at the @veloxchem.bsky.social booth. Presenting our QM software as well as @viamd.bsky.social. #WATOC #compchem
June 18, 2025 at 10:12 AM
See you there. I'll be at the @veloxchem.bsky.social booth. Presenting our QM software as well as @viamd.bsky.social. #WATOC #compchem
Reposted by VIAMD
Registration deadline June 15 approaching ....
Martini workshop registration now open !!!!
See cgmartini.nl for details and how to apply.
Looking forward to seeing you in Groningen, Aug 11-15th.
See cgmartini.nl for details and how to apply.
Looking forward to seeing you in Groningen, Aug 11-15th.
June 7, 2025 at 5:05 PM
Registration deadline June 15 approaching ....
Reposted by VIAMD
Get inside a bacterial cell with this cool combination of @cg-martini.bsky.social and @viamd.bsky.social
Also check out our recent webinars on each:
🎬 Whole cell simulation with Martini ▶️ youtu.be/fvFaPgSoM90
🎬 Visual analysis of #moleculardynamics with VIAMD ▶️ youtu.be/wVENzcx0XmQ
Also check out our recent webinars on each:
🎬 Whole cell simulation with Martini ▶️ youtu.be/fvFaPgSoM90
🎬 Visual analysis of #moleculardynamics with VIAMD ▶️ youtu.be/wVENzcx0XmQ
Interactive visualization of @cg-martini.bsky.social bacterial cell with @viamd.bsky.social. #compchem @gromacs.bsky.social
June 4, 2025 at 11:36 AM
Get inside a bacterial cell with this cool combination of @cg-martini.bsky.social and @viamd.bsky.social
Also check out our recent webinars on each:
🎬 Whole cell simulation with Martini ▶️ youtu.be/fvFaPgSoM90
🎬 Visual analysis of #moleculardynamics with VIAMD ▶️ youtu.be/wVENzcx0XmQ
Also check out our recent webinars on each:
🎬 Whole cell simulation with Martini ▶️ youtu.be/fvFaPgSoM90
🎬 Visual analysis of #moleculardynamics with VIAMD ▶️ youtu.be/wVENzcx0XmQ
Reposted by VIAMD
MA(R/S)TINI 3: An Enhanced Coarse-Grained Force Field for Accurate Modeling of Cyclic Peptide Self-Assembly and Membrane Interactions | Journal of Chemical Theory and Computation pubs.acs.org/doi/full/10....
pubs.acs.org
June 3, 2025 at 12:04 PM
MA(R/S)TINI 3: An Enhanced Coarse-Grained Force Field for Accurate Modeling of Cyclic Peptide Self-Assembly and Membrane Interactions | Journal of Chemical Theory and Computation pubs.acs.org/doi/full/10....
Reposted by VIAMD
Interactive visualization of @cg-martini.bsky.social bacterial cell with @viamd.bsky.social. #compchem @gromacs.bsky.social
June 2, 2025 at 1:44 PM
Interactive visualization of @cg-martini.bsky.social bacterial cell with @viamd.bsky.social. #compchem @gromacs.bsky.social
Reposted by VIAMD
In addition to our website veloxchem.org, we are now opening the discussion on github, this is the place to exchange and ask questions about veloxchem (github.com/orgs/VeloxCh...). #compchem
veloxchem.org
May 27, 2025 at 1:04 PM
In addition to our website veloxchem.org, we are now opening the discussion on github, this is the place to exchange and ask questions about veloxchem (github.com/orgs/VeloxCh...). #compchem
Reposted by VIAMD
Want to know more about Veloxchem and @viamd.bsky.social. Join us for a hands-on workshop and learn how to unlock the power of @lumi-supercomputer.eu for quantum chemistry using VeloxChem! Date and Place: May 26–27, 2025, CSC. Info and registration: csc.fi/en/training-... #compchem
VeloxChem on LUMI workshop - CSC
This workshop introduces participants to quantum chemistry simulations using VeloxChem on the LUMI supercomputer, with a focus on utilizing the GPU resources on LUMI-G for high-performance electronic ...
csc.fi
May 12, 2025 at 8:32 AM
Want to know more about Veloxchem and @viamd.bsky.social. Join us for a hands-on workshop and learn how to unlock the power of @lumi-supercomputer.eu for quantum chemistry using VeloxChem! Date and Place: May 26–27, 2025, CSC. Info and registration: csc.fi/en/training-... #compchem
Reposted by VIAMD
🔬 Into quantum chemistry + HPC?
Join the VeloxChem on LUMI Workshop — 26–27 May 2025 in Espoo, Finland!
💡 Learn to:
Run VeloxChem via Jupyter
Scale jobs on LUMI's GPUs with Slurm
Analyze results with VIAMD
Info + signup 👉 lumi-supercomputer.eu/events/velox...
lumi-supercomputer.eu/events/velox...
Join the VeloxChem on LUMI Workshop — 26–27 May 2025 in Espoo, Finland!
💡 Learn to:
Run VeloxChem via Jupyter
Scale jobs on LUMI's GPUs with Slurm
Analyze results with VIAMD
Info + signup 👉 lumi-supercomputer.eu/events/velox...
lumi-supercomputer.eu/events/velox...
April 25, 2025 at 12:16 PM
🔬 Into quantum chemistry + HPC?
Join the VeloxChem on LUMI Workshop — 26–27 May 2025 in Espoo, Finland!
💡 Learn to:
Run VeloxChem via Jupyter
Scale jobs on LUMI's GPUs with Slurm
Analyze results with VIAMD
Info + signup 👉 lumi-supercomputer.eu/events/velox...
lumi-supercomputer.eu/events/velox...
Join the VeloxChem on LUMI Workshop — 26–27 May 2025 in Espoo, Finland!
💡 Learn to:
Run VeloxChem via Jupyter
Scale jobs on LUMI's GPUs with Slurm
Analyze results with VIAMD
Info + signup 👉 lumi-supercomputer.eu/events/velox...
lumi-supercomputer.eu/events/velox...
Hi #compchem people, there is a playlist of tutorial videos for VIAMD available here: www.youtube.com/playlist?lis.... The first one is just a quick overview of the software: youtu.be/7X4pMv1Hf-4?.... Following videos in the thread will describe specific features of VIAMD🧵
VIAMD - Quick Overview
YouTube video by mathieu linares
youtu.be
April 7, 2025 at 8:36 AM
Hi #compchem people, there is a playlist of tutorial videos for VIAMD available here: www.youtube.com/playlist?lis.... The first one is just a quick overview of the software: youtu.be/7X4pMv1Hf-4?.... Following videos in the thread will describe specific features of VIAMD🧵