New machine learning method for automated extraction of gene-disease relationships from the literature using @gene2phenotype.bsky.social - should make future curation much faster, easier and more comprehensive, see preprint: www.medrxiv.org/content/10.1...

Domain-wide Mapping of Peer-reviewed Literature for Genetic Developmental Disorders using Machine Learning and Gene2Phenotype https://www.medrxiv.org/content/10.1101/2025.11.24.25340871v1

…and another pre-print - “The Significance of Molecular Heterogeneity in Breast Cancer Batch Correction and Dataset Integration” - www.medrxiv.org/content/10.1...

(1/2)

Our latest pre-print just out - “Combining Clinical Embeddings with Multi-Omic Features for Improved Patient Classification and Interpretability in Parkinson’s Disease” - www.medrxiv.org/content/10.1.... (1/2)

SIDB are partnering with the School of Informatics, University of Edinburgh to offer studentships that will use AI methods to improve our understanding of autism & neurodevelopmental conditions.

Find a project that interests you: www.ai4biomed.io/research/pro...

We have fully-funded PhD opportunities combining AI & Autism Research!

Find out more & apply by 20th Jan >> www.ai4biomed.io/research/pro...

@tisimpson.bsky.social #healthinformatics #biomedicalengineering #biomedicalimaging #genomicmedicine #ExtraordinaryEdinburgh

This is a great piece of research on the state of scientific publishing and I’d say essential reading. It’s not sustainable and it’s incredibly damaging to our reputation as a community. Many thanks to the authors for shining a light on this issue and backing it up with quantitative evidence.

Absolutely delighted to be partnering with SIDB; combining AI and Autism Research to improve our understanding of ASDs. We have a very exciting collection of PhD projects open for applications - www.ai4biomed.io/research/pro... closing 8th January.

SIDB has partnered with The UKRI AI CDT in Biomedical Innovation. Our PhD studentships have a strong translational focus and seek to develop & apply AI approaches to biomedical domains.

Find out more & apply by 20th Jan >> www.ai4biomed.io/research/pro...

@tisimpson.bsky.social

Our MOGDx method now out in Bioinformatics. If you’re interested in multi-modal integration you might find this useful. academic.oup.com/bioinformati...

📢 Latest MOGDx pre-print, this time for Parkinson’s Disease.

Ryan B, Marioni RE, Simpson TI. An Integrative Network Approach for Longitudinal Stratification in Parkinson’s Disease. medRxiv 2024 - doi.org/10.1101/2024.0…

Congratulations Barry Ryan @BioMedAI_CDT

Very much looking forward to be hosting our first tutorial at #ISMB24 iscb.org/ismb2024/ this summer in Montreal with @BioMedAI_CDT students Barry Ryan, Sebestyén Kamp.

“Modelling Multi-Modal Biomedical Data Using Networks “ - iscb.org/ismb2024/progr…

Our comprehensive 2022 paper on explainable AI www.sciencedirect.com/science/arti... #artificialintelligence #machinelearning #datascience #bioinformatics #XAI

I'm delighted to release the first half of my new textbook in human genetics:
web.stanford.edu/group/pritch...

"An Owner's Guide to the Human Genome: an introduction to human population genetics, variation and disease"

Our latest preprint ➡️ Omics network integration and GNNs for patient class prediction. Multi-Omic Graph Diagnosis (MOGDx) : A data integration tool to perform classification tasks for heterogeneous diseases - www.medrxiv.org/content/10.1... #gnn #networks #dataintegration #omics