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tcamenzind.bsky.social
@tcamenzind.bsky.social
fungal ecologist loving soil science
Reposted
As a writer, teacher, AE, and reviewer, i share lots of their views. We need to work together to improve the system.
The peer-review crisis: how to fix an overloaded system www.nature.com/articles/d41...
The peer-review crisis: how to fix an overloaded system
Journals and funders are trying to boost the speed and effectiveness of review processes that are under strain.
www.nature.com
August 8, 2025 at 4:06 PM
Happy to share this big piece on saprobic fungal traits and soil carbon cycling. Great collaboration in the SPP SoilSystems @dfg.de , with Damien Finn, Sören Thiele-Bruhn, Denise Vonhoegen, @mrillig.bsky.social and many others contributing to the study. www.biorxiv.org/content/10.1...
What are all these soil fungi doing? Complex carbon use ability as a predictive trait for fungal community functions
Fungal communities in soil play important roles in decomposition processes and soil organic carbon cycling. These communities are tremendously diverse, making it challenging to assign relevant functio...
www.biorxiv.org
July 17, 2025 at 8:07 PM
Looks like a very useful tool, congrats to the group of Fernanda Pinheiro. A parallel R package would be nice :)
July 15, 2025 at 7:59 PM
Reposted
Systematic pairwise co-cultures uncover predominant negative interactions among human gut bacteria

-in BMC Microbiome

microbiomejournal.biomedcentral.com/articles/10....
Systematic pairwise co-cultures uncover predominant negative interactions among human gut bacteria - Microbiome
Background Understanding pairwise bacterial interactions in the human gut is crucial for deciphering the complex networks of bacterial interactions and their contributions to host health. However, the...
microbiomejournal.biomedcentral.com
July 10, 2025 at 2:16 PM
This is awesome work on fungal lignin breakdown. And I like this "simplified" overview graph of lignin breakdown. www.nature.com/articles/s41...
Cross-kingdom comparative genomics reveal the metabolic potential of fungi for lignin turnover in deadwood - Nature Ecology & Evolution
This study uses comparative genomics and phylogenetics to analyse the distribution and evolution of key enzymes involved in the catabolism of lignin-related aromatic compounds in the bacterial and fun...
www.nature.com
July 10, 2025 at 3:09 PM
Reposted
📢✨ONLINE FIRST!✨

How do anthropogenic drivers influence @soilbiodiversity change? Find out here!

@bartoszbartk.com @eisenhauerlab.bsky.social @mrillig.bsky.social @christianristok.bsky.social @doreenbabin.bsky.social Jörg Römbke, Frank Galante, Christina Lachman

soil-organisms.org/index.php/SO...
June 23, 2025 at 8:24 AM
Reposted
Systematic mapping of experimental approaches to studying common #mycorrhizal networks in arbuscular mycorrhiza

#Review by Anika Lehmann and @mrillig.bsky.social

📖 nph.onlinelibrary.wiley.com/doi/10.1002/...

#LatestIssue
June 18, 2025 at 2:31 PM
Alptekin et al. suggest glomalin is a carbohydrate - glomalose. I wonder how this is different from EPS?
nph.onlinelibrary.wiley.com/doi/10.1111/...
From glomalin to glomalose: unraveling the molecular identity of the MAb32B11 antigen
Glomalin, a substance produced by arbuscular mycorrhizal (AM) fungi, has well-documented benefits for plant and soil health, including water retention and soil aggregation. Glomalin quantification h...
nph.onlinelibrary.wiley.com
June 11, 2025 at 7:33 AM
The Raunkiæran shortfalls to trait ecology. Great read on the limitations of trait concepts, and solutions. Led by Francesco de Bello
esajournals.onlinelibrary.wiley.com/doi/10.1002/...
Raunkiæran shortfalls: Challenges and perspectives in trait‐based ecology
Trait-based ecology, a prominent research field identifying traits linked to the distribution and interactions of organisms and their impact on ecosystem functioning, has flourished in the last three....
esajournals.onlinelibrary.wiley.com
June 8, 2025 at 7:58 AM
Very important topic on the functional significance of AM root colonization
nph.onlinelibrary.wiley.com/doi/10.1111/...
What does colonisation tell us? Revisiting the functional outcomes of root colonisation by arbuscular mycorrhizal fungi
Click on the article title to read more.
nph.onlinelibrary.wiley.com
June 4, 2025 at 11:06 AM
Reposted
Exciting postdoc opportunity with Milda Pucetaite and us in the Soilchip group: Become the spectroscopy expert in our multimodal fungal recognition project within our interdisciplinary VR research environment:) lu.varbi.com/what:job/job...
Postdoktor i utveckling av Ramanspektroskopi av jordmikrober
Särskild ämnesbeskrivning Jordmånen är grunden för vårt samhälle och vår livsmedelssäkerhet, men den är fortfarande en av de sista domänerna i vårt moderna liv som teknologiseras. Jordmikr
lu.varbi.com
May 27, 2025 at 4:04 PM
And congratulations to Yongxing Cui to this global analysis of microbial nutrient limitations, just published in @pnas.org Thank you for the fun collaboration
May 23, 2025 at 8:09 PM
In case somebody is still here, getting really quiet in blue skies..
There is some new research on EPS production under different resource conditions in bacteria and fungi, led by Rebeca Leme Oliva. Great collaboration with Rainer Joergensen bmcmicrobiol.biomedcentral.com/articles/10....
Constituent of extracellular polymeric substances (EPS) produced by a range of soil bacteria and fungi - BMC Microbiology
Extracellular polymeric substances (EPS) produced by soil bacteria and fungi are crucial for microbial growth and provide many functions for the soil and its microbes. EPS composition may depend on mi...
bmcmicrobiol.biomedcentral.com
May 23, 2025 at 8:05 PM
Wind dispersal shapes fungal communities, especially mushroom forming species. Nice study design by Peter Pellitier and @mykophile.bsky.socialonlinelibrary.wiley.com/doi/10.1111/...
Wind Patterns Influence the Dispersal and Assembly of North American Soil Fungal Communities
Wind is the primary vector of fungal spore dispersal. We document that windflow patterns, both the direction and magnitude, exhibit a significant influence on the composition and diversity of soil fu....
onlinelibrary.wiley.com
May 23, 2025 at 8:03 PM
When thinking about soil microbial necromass composition and biomarker significance, having good knowledge of microbial cell wall composition is crucial.
Another great review on the fungal cell wall by Neil Gow
www.sciencedirect.com/science/arti...
Fungal cell wall biogenesis: structural complexity, regulation and inhibition
The cell wall is the defining organelle of filamentous and yeast-like fungi. It is responsible for morphology, biotic and abiotic interactions and its…
www.sciencedirect.com
May 9, 2025 at 8:16 PM
Reposted
The AmazonFACE project is offering post doc scholarships, based in Manaus, Brazil!
April 14, 2025 at 3:48 PM
Reposted
Fungal mycelia are finally getting the spotlight they deserve! And how could they not? Their morphology is just stunning! We tracked our friend Absidia sp. forming this intricate exploratory mycelium, showcasing unique elongation and branching patterns #fungi #mycelium #networks
March 18, 2025 at 5:04 AM
Reposted
Interesting proposal to classify ectomycorrhizal fungi along a continuum from miners to absorbers. 👇🍄 An inspiring read, so much potential for studies testing this trait spectrum! 🤓 🧪🌍
April 7, 2025 at 2:01 PM
Reposted
www.sciencedirect.com/science/arti...

Should we all be evaluating how we can better measure AM fungal colonisation?

It should be very informative right? But is it? Probably depends what you're after.

How well does it predict plant outcomes?
Contrasting common measures of arbuscular mycorrhizal fungal root colonization
Estimating the abundance of arbuscular mycorrhizal fungi relies entirely on indirect methods, meaning all measures are associated with some variabilit…
www.sciencedirect.com
March 22, 2025 at 10:48 PM
Reposted
RP PLS! Iʻm hiring 3 postdocs at U Hawaiʻi to study yeast diversity and evolution, marine fungi, and the genomics of microbiomes in experimental foodwebs. All of these projects have existing datasets and LATITUDE to pursue individual interests and "blue sky" ideas www.dropbox.com/scl/fi/5d7u4...
November 26, 2024 at 7:19 PM
Reposted
I proudly present a new review paper of my group that just came out in Trends in Microbiology @cp-trendsmicrobiol.bsky.social
with Leonardo Ona and Shryli Shreekar

Disentangling microbial interaction networks

Open access link:
authors.elsevier.com/sd/article/S...
ScienceDirect.com | Science, health and medical journals, full text articles and books.
authors.elsevier.com
March 5, 2025 at 6:56 AM
Such an amazing study 👍
This massive collaboration led by Loreto Oyarte Gálvez & @cbisot.bsky.social spans several disciplines (mycology, robotics, biophysics, evolutionary biology), 28 researchers across several labs (AMOLF, VU, SPUN, Princeton) & many (many) years of work.

See video here www.youtube.com/watch?v=tOUh...
Exploring “A travelling-wave strategy for plant–fungal trade”
YouTube video by SPUN
www.youtube.com
February 27, 2025 at 8:20 PM
Reposted
New paper out with collaborators Tida Ge, Shuang Wang and others: Phages Affect Soil Dissolved Organic Matter Mineralization by Shaping Bacterial Communities doi.org/10.1021/acs....
Phages Affect Soil Dissolved Organic Matter Mineralization by Shaping Bacterial Communities
Viruses are considered to regulate bacterial communities and terrestrial nutrient cycling, yet their effects on bacterial metabolism and the mechanisms of carbon (C) dynamics during dissolved organic matter (DOM) mineralization remain unknown. Here, we added active and inactive bacteriophages (phages) to soil DOM with original bacterial communities and incubated them at 18 or 23 °C for 35 days. Phages initially (1–4 days) reduced CO2 efflux rate by 13-21% at 18 °C and 3–30% at 23 °C but significantly (p < 0.05) increased by 4–29% at 18 °C and 9–41% at 23 °C after 6 days, raising cumulative CO2 emissions by 14% at 18 °C and 21% at 23 °C. Phages decreased dominant bacterial taxa and increased bacterial community diversity (consistent with a “cull-the-winner” dynamic), thus altering the predicted microbiome functions. Specifically, phages enriched some taxa (such as Pseudomonas, Anaerocolumna, and Caulobacter) involved in degrading complex compounds and consequently promoted functions related to C cycling. Higher temperature facilitated phage-bacteria interactions, increased bacterial diversity, and enzyme activities, boosting DOM mineralization by 16%. Collectively, phages impact soil DOM mineralization by shifting microbial communities and functions, with moderate temperature changes modulating the magnitude of these processes but not qualitatively altering their behavior.
doi.org
February 3, 2025 at 11:14 AM