Simon van Vliet
@simonvanvliet.bsky.social
Junior Group Leader @ Biozentrum-UniBasel & DMF-UNIL
Physicist turned biologist | Ecology & evolution of complex systems | Emergent behavior in microbial systems
vanvlietlab.ch
Physicist turned biologist | Ecology & evolution of complex systems | Emergent behavior in microbial systems
vanvlietlab.ch
Reposted by Simon van Vliet
Excited to finally share the typeset version of our very first venture into microbial ecology! 🤩
Big thanks to @simonvanvliet.bsky.social for a rewarding collaboration within the NCCR Microbiomes.
@fbm-unil.bsky.social
@dmf-unil.bsky.social
Big thanks to @simonvanvliet.bsky.social for a rewarding collaboration within the NCCR Microbiomes.
@fbm-unil.bsky.social
@dmf-unil.bsky.social
Uptake and leakage rates differentially shape community arrangement and composition of microbial consortia url: academic.oup.com/ismej/articl...
Uptake and leakage rates differentially shape community arrangement and composition of microbial consortia
Abstract. Bacteria often grow as communities in intricate spatial arrangements on surfaces and interact with each other through the local exchange of diffu
academic.oup.com
September 10, 2025 at 7:44 PM
Excited to finally share the typeset version of our very first venture into microbial ecology! 🤩
Big thanks to @simonvanvliet.bsky.social for a rewarding collaboration within the NCCR Microbiomes.
@fbm-unil.bsky.social
@dmf-unil.bsky.social
Big thanks to @simonvanvliet.bsky.social for a rewarding collaboration within the NCCR Microbiomes.
@fbm-unil.bsky.social
@dmf-unil.bsky.social
Reposted by Simon van Vliet
New tenure track assistant professor position in molecular microbiology in our department @dmf-unil.bsky.social @unil.bsky.social! We are casting a wide net for an experimental molecular microbiologist. Apply here: wwwfbm.unil.ch/releve/appli...
DMF: Tenure Track Assistant Professor towards Associate Professor in Molecular Microbiology - Site des postulations FBM
wwwfbm.unil.ch
June 10, 2025 at 1:53 PM
New tenure track assistant professor position in molecular microbiology in our department @dmf-unil.bsky.social @unil.bsky.social! We are casting a wide net for an experimental molecular microbiologist. Apply here: wwwfbm.unil.ch/releve/appli...
Reposted by Simon van Vliet
How does metabolic dependency evolve at the single cell level? 🔄
In our new preprint, Divvya Ramesh combines microfluidics, microscopy and modelling to show that the benefits of gene loss are highly context dependent.
Check it out here: www.biorxiv.org/content/10.1...
In our new preprint, Divvya Ramesh combines microfluidics, microscopy and modelling to show that the benefits of gene loss are highly context dependent.
Check it out here: www.biorxiv.org/content/10.1...
www.biorxiv.org
May 13, 2025 at 11:22 AM
How does metabolic dependency evolve at the single cell level? 🔄
In our new preprint, Divvya Ramesh combines microfluidics, microscopy and modelling to show that the benefits of gene loss are highly context dependent.
Check it out here: www.biorxiv.org/content/10.1...
In our new preprint, Divvya Ramesh combines microfluidics, microscopy and modelling to show that the benefits of gene loss are highly context dependent.
Check it out here: www.biorxiv.org/content/10.1...
Reposted by Simon van Vliet
🧩 PhD Position – Origins of Darwinian Inheritance 🧩
This joint PhD project between the @rug.nl (Rampal Etienne & Martijn Egas) and @utrechtuniversity.bsky.social (Bram van Dijk) explores how simple prebiotic systems could evolve reliable information transfer.
Apply here: shorturl.at/WgYMF
This joint PhD project between the @rug.nl (Rampal Etienne & Martijn Egas) and @utrechtuniversity.bsky.social (Bram van Dijk) explores how simple prebiotic systems could evolve reliable information transfer.
Apply here: shorturl.at/WgYMF
May 9, 2025 at 2:55 PM
🧩 PhD Position – Origins of Darwinian Inheritance 🧩
This joint PhD project between the @rug.nl (Rampal Etienne & Martijn Egas) and @utrechtuniversity.bsky.social (Bram van Dijk) explores how simple prebiotic systems could evolve reliable information transfer.
Apply here: shorturl.at/WgYMF
This joint PhD project between the @rug.nl (Rampal Etienne & Martijn Egas) and @utrechtuniversity.bsky.social (Bram van Dijk) explores how simple prebiotic systems could evolve reliable information transfer.
Apply here: shorturl.at/WgYMF
Reposted by Simon van Vliet
Applications now open for UNIL Summer School on Modelling for Evo Bio (1–6 Sept 2025, Lausanne)!
Aimed at PhD students interested in formal approaches to evolutionary ecology questions like sexual selection, social & life-history evolution. Scholarships available.
Pls share! www.shorturl.at/znk5g
Aimed at PhD students interested in formal approaches to evolutionary ecology questions like sexual selection, social & life-history evolution. Scholarships available.
Pls share! www.shorturl.at/znk5g
April 17, 2025 at 3:21 PM
Applications now open for UNIL Summer School on Modelling for Evo Bio (1–6 Sept 2025, Lausanne)!
Aimed at PhD students interested in formal approaches to evolutionary ecology questions like sexual selection, social & life-history evolution. Scholarships available.
Pls share! www.shorturl.at/znk5g
Aimed at PhD students interested in formal approaches to evolutionary ecology questions like sexual selection, social & life-history evolution. Scholarships available.
Pls share! www.shorturl.at/znk5g
Reposted by Simon van Vliet
Great to see this out! 🎉 Big congratulations to @type3lab.bsky.social for leading the project and to all involved!
"Pseudomonas syringae subpopulations cooperate by coordinating flagellar and T3SS spatiotemporal dynamics to facilitate plant infection" 🌱🦠 rdcu.be/egczU
🧵⬇️ #MicroSky #PlantScience
"Pseudomonas syringae subpopulations cooperate by coordinating flagellar and T3SS spatiotemporal dynamics to facilitate plant infection" 🌱🦠 rdcu.be/egczU
🧵⬇️ #MicroSky #PlantScience
How Bacteria Outsmart Plants—Then Flee the Scene!
#MicroSky #PlantScience #Pseudomonas
Our new research in Nature Microbiology uncovers the sophisticated teamwork of Pseudomonas syringae, a notorious plant pathogen.
🔗 rdcu.be/egczU
#MicroSky #PlantScience #Pseudomonas
Our new research in Nature Microbiology uncovers the sophisticated teamwork of Pseudomonas syringae, a notorious plant pathogen.
🔗 rdcu.be/egczU
Pseudomonas syringae subpopulations cooperate by coordinating flagellar and type III secretion spatiotemporal dynamics to facilitate plant infection
Nature Microbiology - Single-cell gene expression analysis reveals phenotypic heterogeneity to enable bacterial specialization over the course of plant colonization.
rdcu.be
April 4, 2025 at 9:55 AM
Great to see this out! 🎉 Big congratulations to @type3lab.bsky.social for leading the project and to all involved!
"Pseudomonas syringae subpopulations cooperate by coordinating flagellar and T3SS spatiotemporal dynamics to facilitate plant infection" 🌱🦠 rdcu.be/egczU
🧵⬇️ #MicroSky #PlantScience
"Pseudomonas syringae subpopulations cooperate by coordinating flagellar and T3SS spatiotemporal dynamics to facilitate plant infection" 🌱🦠 rdcu.be/egczU
🧵⬇️ #MicroSky #PlantScience
Reposted by Simon van Vliet
🚨We have a fully funded open PhD position in bacterial synthetic biology available in our lab (www.yschaerli.com) in beautiful Lausanne, Switzerland @dmf-unil.bsky.social @fbm-unil.bsky.social @unil.bsky.social
If you are passionate about #SynBio and #GeneCircuits, apply here: tinyurl.com/mry2xwa5
If you are passionate about #SynBio and #GeneCircuits, apply here: tinyurl.com/mry2xwa5
April 9, 2025 at 8:22 AM
🚨We have a fully funded open PhD position in bacterial synthetic biology available in our lab (www.yschaerli.com) in beautiful Lausanne, Switzerland @dmf-unil.bsky.social @fbm-unil.bsky.social @unil.bsky.social
If you are passionate about #SynBio and #GeneCircuits, apply here: tinyurl.com/mry2xwa5
If you are passionate about #SynBio and #GeneCircuits, apply here: tinyurl.com/mry2xwa5
Reposted by Simon van Vliet
early career researchers: Do not miss this oportunity to present and discuss your work with an expert audience!
🚨 Join us for the LS2 Swiss #Systems #Biology Symposium in Bern!
❌ to talk marathons
✔️ to new connections and interactions
➡️Mini parallel sessions with Q&A during the talks.
Keynotes by @ehannezo.bsky.social @leeat-keren.bsky.social
tinyurl.com/5hf485ee
@lifesciswitzerland.bsky.social
❌ to talk marathons
✔️ to new connections and interactions
➡️Mini parallel sessions with Q&A during the talks.
Keynotes by @ehannezo.bsky.social @leeat-keren.bsky.social
tinyurl.com/5hf485ee
@lifesciswitzerland.bsky.social
March 25, 2025 at 7:14 AM
early career researchers: Do not miss this oportunity to present and discuss your work with an expert audience!
Reposted by Simon van Vliet
Apply now: Eawag Postdoctoral Fellowship 📢💪
The Eawag postdoctoral fellowship is designed for outstanding early-career researchers with innovative ideas
👉 www.eawag.ch/en/about-us/...
The Eawag postdoctoral fellowship is designed for outstanding early-career researchers with innovative ideas
👉 www.eawag.ch/en/about-us/...
March 18, 2025 at 8:21 AM
Apply now: Eawag Postdoctoral Fellowship 📢💪
The Eawag postdoctoral fellowship is designed for outstanding early-career researchers with innovative ideas
👉 www.eawag.ch/en/about-us/...
The Eawag postdoctoral fellowship is designed for outstanding early-career researchers with innovative ideas
👉 www.eawag.ch/en/about-us/...
Reposted by Simon van Vliet
This is one of the best features I have seen on blue sky yet- a custom feed of papers from people you follow. I had to un-follow the various biorxiv channels, as it was dominant, but now I am seeing lots of cool papers from people I follow.
Great work on this feed, @paper-feed.bsky.social team!
Great work on this feed, @paper-feed.bsky.social team!
Welcome to your personalized Paper Skygest, a curated feed showing posts from your network.
📌 To pin this feed, select the pin icon at the top right of the feed. When you pin it, you'll see it up above here!
➡️ Follow this account for Skygest updates!
📌 To pin this feed, select the pin icon at the top right of the feed. When you pin it, you'll see it up above here!
➡️ Follow this account for Skygest updates!
March 14, 2025 at 5:46 PM
This is one of the best features I have seen on blue sky yet- a custom feed of papers from people you follow. I had to un-follow the various biorxiv channels, as it was dominant, but now I am seeing lots of cool papers from people I follow.
Great work on this feed, @paper-feed.bsky.social team!
Great work on this feed, @paper-feed.bsky.social team!
Reposted by Simon van Vliet
We are recruiting @ox.ac.uk @dunnschool.bsky.social for a joint project between Kevin Foster's group and mine! Cluster hire of two postdocs interested in:
1) Mucosal immunology and oral vaccine development
my.corehr.com/pls/uoxrecru...
2) Microbiology
my.corehr.com/pls/uoxrecru...
Please share!
1) Mucosal immunology and oral vaccine development
my.corehr.com/pls/uoxrecru...
2) Microbiology
my.corehr.com/pls/uoxrecru...
Please share!
'
my.corehr.com
February 22, 2025 at 8:07 PM
We are recruiting @ox.ac.uk @dunnschool.bsky.social for a joint project between Kevin Foster's group and mine! Cluster hire of two postdocs interested in:
1) Mucosal immunology and oral vaccine development
my.corehr.com/pls/uoxrecru...
2) Microbiology
my.corehr.com/pls/uoxrecru...
Please share!
1) Mucosal immunology and oral vaccine development
my.corehr.com/pls/uoxrecru...
2) Microbiology
my.corehr.com/pls/uoxrecru...
Please share!
There is still time to apply to the Alma Dal Co School on Collective Behaviour! The deadline has been extended till March 16th. We would especially welcome applications from members of underrepresented groups. Limited travel grants are available. Apply now and join us! almadalcoschool.github.io
February 27, 2025 at 7:56 AM
There is still time to apply to the Alma Dal Co School on Collective Behaviour! The deadline has been extended till March 16th. We would especially welcome applications from members of underrepresented groups. Limited travel grants are available. Apply now and join us! almadalcoschool.github.io
Reposted by Simon van Vliet
Two (!) perspective pieces published today involving people from our lab! @adelpanta.bsky.social on spatial patterning in microbial communities www.nature.com/articles/s41... and @salazarafra.bsky.social on microbial communities as evolutionary individuals www.sciencedirect.com/science/arti...
Disentangling the feedback loops driving spatial patterning in microbial communities - npj Biofilms and Microbiomes
npj Biofilms and Microbiomes - Disentangling the feedback loops driving spatial patterning in microbial communities
www.nature.com
February 20, 2025 at 2:41 PM
Two (!) perspective pieces published today involving people from our lab! @adelpanta.bsky.social on spatial patterning in microbial communities www.nature.com/articles/s41... and @salazarafra.bsky.social on microbial communities as evolutionary individuals www.sciencedirect.com/science/arti...
What determines the spatial structure of microbial communities? In our new review we discuss the factors and feedbacks that affect spatial patterning and methods to study them. Great collaboration w. @saramitri.bsky.social @adelpanta.bsky.social & @micsysecolab.bsky.social doi.org/10.1038/s415... 🦠
February 20, 2025 at 3:00 PM
What determines the spatial structure of microbial communities? In our new review we discuss the factors and feedbacks that affect spatial patterning and methods to study them. Great collaboration w. @saramitri.bsky.social @adelpanta.bsky.social & @micsysecolab.bsky.social doi.org/10.1038/s415... 🦠
Reposted by Simon van Vliet
We are looking for a bioinformatician with expertise in microbiome data analysis join our team at the University of Lausanne. The successful candidate will lead and support research projects within nccr-microbiomes.ch. More details here: shorturl.at/mC46o . Please share with potential candidates.
Opportunités de carrière : Research Associate position in bioinformatics support (22124)
shorturl.at
February 18, 2025 at 10:09 PM
We are looking for a bioinformatician with expertise in microbiome data analysis join our team at the University of Lausanne. The successful candidate will lead and support research projects within nccr-microbiomes.ch. More details here: shorturl.at/mC46o . Please share with potential candidates.
Reposted by Simon van Vliet
Interested in microbial #metabolism, #mucosalbiology and #UTI? Then check out the open postdoctoral position in the Mucosal Immunology Group at ETH Zurich! NB: All applications must go via the ETH job portal:
www.jobs.ethz.ch/job/view/JOP...
Closing date: 24th Feburary
🧪🧫🔬
www.jobs.ethz.ch/job/view/JOP...
Closing date: 24th Feburary
🧪🧫🔬
Postdoctoral researcher –Understanding bacterial metabolism in the urinary tract
www.jobs.ethz.ch
January 26, 2025 at 1:25 PM
Interested in microbial #metabolism, #mucosalbiology and #UTI? Then check out the open postdoctoral position in the Mucosal Immunology Group at ETH Zurich! NB: All applications must go via the ETH job portal:
www.jobs.ethz.ch/job/view/JOP...
Closing date: 24th Feburary
🧪🧫🔬
www.jobs.ethz.ch/job/view/JOP...
Closing date: 24th Feburary
🧪🧫🔬
Reposted by Simon van Vliet
We are looking for a postdoc in bioinformatics interested in broad questions about the ecology and evolution of host-associated microbiomes using social bees as model. Please share with potential candidates and if interested apply here: career5.successfactors.eu/career?caree...
Career Opportunities: Postdoctoral position in bioinformatics/gut microbiota ecology and evolution (22087)
career5.successfactors.eu
February 5, 2025 at 12:42 PM
We are looking for a postdoc in bioinformatics interested in broad questions about the ecology and evolution of host-associated microbiomes using social bees as model. Please share with potential candidates and if interested apply here: career5.successfactors.eu/career?caree...
Only 3 weeks left to apply to the first Alma Dal Co School on Collective Behaviour! We have a great line-up of speakers and a program designed to maximize interactions between and among speakers and participants. Applications open to all ECRs (PhD - young PIs). More info: almadalcoschool.github.io
Home
The Alma Dal Co School on Collective Behaviour
almadalcoschool.github.io
February 7, 2025 at 9:23 AM
Only 3 weeks left to apply to the first Alma Dal Co School on Collective Behaviour! We have a great line-up of speakers and a program designed to maximize interactions between and among speakers and participants. Applications open to all ECRs (PhD - young PIs). More info: almadalcoschool.github.io
Reposted by Simon van Vliet
Our framework explaining why ecological interactions change between contexts is out in Ecology Letters!
A lovely collaboration with @saramitri.bsky.social which provides experimentally-testable links between the physiology and ecology of microbes.
onlinelibrary.wiley.com/doi/10.1111/...
A lovely collaboration with @saramitri.bsky.social which provides experimentally-testable links between the physiology and ecology of microbes.
onlinelibrary.wiley.com/doi/10.1111/...
Environment‐Organism Feedbacks Drive Changes in Ecological Interactions
Ecological interactions are central to our understanding of the composition and function of communities, but attempts to use them as a theoretical foundation for experimental ecology have been confou....
onlinelibrary.wiley.com
January 2, 2025 at 10:53 AM
Our framework explaining why ecological interactions change between contexts is out in Ecology Letters!
A lovely collaboration with @saramitri.bsky.social which provides experimentally-testable links between the physiology and ecology of microbes.
onlinelibrary.wiley.com/doi/10.1111/...
A lovely collaboration with @saramitri.bsky.social which provides experimentally-testable links between the physiology and ecology of microbes.
onlinelibrary.wiley.com/doi/10.1111/...
Reposted by Simon van Vliet
Every two years, ISME celebrates the achievements of scientists who have substantially advanced the field of microbial ecology. If you know of outstanding members of the community worthy of an ISME Society Award, please fill in the nominations ballot by 31 Jan 2025👇🏼
isme-microbes.org/call-for-ism...
isme-microbes.org/call-for-ism...
Call for ISME Society Awards nominations - ISME
We encourage our membership to nominate individuals worthy of winning one of our three prestigious awards.
isme-microbes.org
December 10, 2024 at 6:28 AM
Every two years, ISME celebrates the achievements of scientists who have substantially advanced the field of microbial ecology. If you know of outstanding members of the community worthy of an ISME Society Award, please fill in the nominations ballot by 31 Jan 2025👇🏼
isme-microbes.org/call-for-ism...
isme-microbes.org/call-for-ism...
Reposted by Simon van Vliet
Amazing speakers & program at the inaugural Alma Dal Co School on Collective Behavior in Venice (Sep 29-Oct 4, 2025). This interactive meeting focuses on collective behaviour across biological systems. Apply now!
almadalcoschool.github.io
almadalcoschool.github.io
December 13, 2024 at 4:27 PM
Amazing speakers & program at the inaugural Alma Dal Co School on Collective Behavior in Venice (Sep 29-Oct 4, 2025). This interactive meeting focuses on collective behaviour across biological systems. Apply now!
almadalcoschool.github.io
almadalcoschool.github.io
Reposted by Simon van Vliet
Great school one collective behavior in memory of Alma Dal Co next Sept in Venice. Terrific lineup of speakers
almadalcoschool.github.io
Application deadline Feb 2025, travel grants available
almadalcoschool.github.io
Application deadline Feb 2025, travel grants available
Home
The Alma Dal Co School on Collective Behaviour
almadalcoschool.github.io
December 8, 2024 at 11:41 AM
Great school one collective behavior in memory of Alma Dal Co next Sept in Venice. Terrific lineup of speakers
almadalcoschool.github.io
Application deadline Feb 2025, travel grants available
almadalcoschool.github.io
Application deadline Feb 2025, travel grants available
Reposted by Simon van Vliet
PhD position available in our lab in 🇨🇭! Interested in microbial ecology and evolution in the context of #Symbiosis, #Microbiota, #Bees? Like to analyze shotgun metagenomics data with the possibility for fieldwork and experiments? This is for you. Apply here: shorturl.at/swHf1 #SymbioSky
Opportunités de carrière : PhD position in gut microbiota ecology and evolution (21945)
shorturl.at
November 6, 2024 at 7:20 PM
PhD position available in our lab in 🇨🇭! Interested in microbial ecology and evolution in the context of #Symbiosis, #Microbiota, #Bees? Like to analyze shotgun metagenomics data with the possibility for fieldwork and experiments? This is for you. Apply here: shorturl.at/swHf1 #SymbioSky
Reposted by Simon van Vliet
Excited to share: The inaugural Alma Dal Co School on Collective Behavior is coming to Venice (Sep 29-Oct 4, 2025). This unique school honors Alma (1989-2022), whose brilliant work bridging physics and microbiology revealed how metabolic interactions structure microbial communities. 1/12
November 4, 2024 at 3:26 PM
Excited to share: The inaugural Alma Dal Co School on Collective Behavior is coming to Venice (Sep 29-Oct 4, 2025). This unique school honors Alma (1989-2022), whose brilliant work bridging physics and microbiology revealed how metabolic interactions structure microbial communities. 1/12
Reposted by Simon van Vliet
Very happy to present our latest preprint in collaboration with @simonvanvliet.bsky.social as part of the NCCR Microbiomes. Estelle engineered uptake and leakage rates in synthetic communities of E. coli amino acid auxotrophs and studied the effects on spatial arrangement and community composition.
July 22, 2024 at 8:02 AM
Very happy to present our latest preprint in collaboration with @simonvanvliet.bsky.social as part of the NCCR Microbiomes. Estelle engineered uptake and leakage rates in synthetic communities of E. coli amino acid auxotrophs and studied the effects on spatial arrangement and community composition.