Robin Araya
@robinaraya.bsky.social
Evolutionary biologist
PhD candidate at the University of Oslo
PhD candidate at the University of Oslo
Reposted by Robin Araya
Super happy to see our paper out! Reference choice matters, especially if you work with species that has lots of chromosomal rearrangements 🧬🐟
New paper out where we demonstrate how pop gen parameters and scoring of structural variants (inversions) could be affected by the choice of reference genome (both in terms of both quality and relatedness).
@unioslo-cees.bsky.social
@biovitenskap.bsky.social
link.springer.com/article/10.1...
@unioslo-cees.bsky.social
@biovitenskap.bsky.social
link.springer.com/article/10.1...
Reference genome bias in light of species-specific chromosomal reorganization and translocations - Genome Biology
Background Whole-genome sequencing efforts, have during the past decade, unveiled the central role of genomic rearrangements—such as chromosomal inversions—in evolutionary processes, including local a...
link.springer.com
October 15, 2025 at 8:18 PM
Super happy to see our paper out! Reference choice matters, especially if you work with species that has lots of chromosomal rearrangements 🧬🐟
Our paper is now published in GBE!
We find that transposable elements (likely) facilitated several large chromosomal inversions in Atlantic cod.
So proud of the work by our team!
doi.org/10.1093/gbe/...
We find that transposable elements (likely) facilitated several large chromosomal inversions in Atlantic cod.
So proud of the work by our team!
doi.org/10.1093/gbe/...
Chromosomal Inversions Mediated by Tandem Insertions of Transposable Elements
Abstract. Chromosomal inversions play a crucial role in evolution by influencing phenotypes through the linkage of coadapted alleles. While inversions have
doi.org
August 25, 2025 at 7:09 PM
Our paper is now published in GBE!
We find that transposable elements (likely) facilitated several large chromosomal inversions in Atlantic cod.
So proud of the work by our team!
doi.org/10.1093/gbe/...
We find that transposable elements (likely) facilitated several large chromosomal inversions in Atlantic cod.
So proud of the work by our team!
doi.org/10.1093/gbe/...
Reposted by Robin Araya
@robinaraya.bsky.social @naturalselection.bsky.social @kjetillsj.bsky.social et al. investigate TEs in four large inversions in Atlantic cod - TEs accumulate in breakpoints, suggesting they drive inversions through ectopic recombination.
🔗 doi.org/10.1093/gbe/evaf131
#genome #evolution #TEsky
🔗 doi.org/10.1093/gbe/evaf131
#genome #evolution #TEsky
Chromosomal Inversions Mediated by Tandem Insertions of Transposable Elements
Abstract. Chromosomal inversions play a crucial role in evolution by influencing phenotypes through the linkage of coadapted alleles. While inversions have
doi.org
August 22, 2025 at 11:14 AM
@robinaraya.bsky.social @naturalselection.bsky.social @kjetillsj.bsky.social et al. investigate TEs in four large inversions in Atlantic cod - TEs accumulate in breakpoints, suggesting they drive inversions through ectopic recombination.
🔗 doi.org/10.1093/gbe/evaf131
#genome #evolution #TEsky
🔗 doi.org/10.1093/gbe/evaf131
#genome #evolution #TEsky
Reposted by Robin Araya
The 2nd publication from @bellareeves.bsky.social PhD thesis finds a genetic rescue effect from admixture between distinct killer whale lineages. Likely the cause of high genetic diversity in regions with low killer whale density. Open access in Mol Ecol: onlinelibrary.wiley.com/doi/epdf/10....
February 28, 2025 at 3:48 PM
The 2nd publication from @bellareeves.bsky.social PhD thesis finds a genetic rescue effect from admixture between distinct killer whale lineages. Likely the cause of high genetic diversity in regions with low killer whale density. Open access in Mol Ecol: onlinelibrary.wiley.com/doi/epdf/10....
Reposted by Robin Araya
We identified and quantified TEs and repeats in breakpoint regions in different inversions in the cod, finding that breakpoints are enriched for the same TE classes.
January 14, 2025 at 12:22 PM
We identified and quantified TEs and repeats in breakpoint regions in different inversions in the cod, finding that breakpoints are enriched for the same TE classes.
Very happy to share our new paper that just came out: “Chromosomal inversions mediated by tandem insertions of transposable elements”
#TEsky #Transposons
www.biorxiv.org/content/10.1...
#TEsky #Transposons
www.biorxiv.org/content/10.1...
Chromosomal inversions mediated by tandem insertions of transposable elements
Chromosomal inversions play a crucial role in evolution by influencing phenotypes through the linkage of co-adapted alleles. While inversions have been found across a large number of taxa, mapping and...
www.biorxiv.org
January 14, 2025 at 8:23 PM
Very happy to share our new paper that just came out: “Chromosomal inversions mediated by tandem insertions of transposable elements”
#TEsky #Transposons
www.biorxiv.org/content/10.1...
#TEsky #Transposons
www.biorxiv.org/content/10.1...