QI@CSHL
@qiatcshl.bsky.social
Quantitative Imaging: From Acquisition to Analysis course at Cold Spring Harbor Laboratory / Posts by QI Instructors & TAs
Applications due 1/31!
https://meetings.cshl.edu/courses.aspx?course=C-QICM
Applications due 1/31!
https://meetings.cshl.edu/courses.aspx?course=C-QICM
Pinned
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💻 Apply to our beginner-friendly Boston Bioimage Analysis Course!
Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!
Fee waivers available thanks to funding from @bioimagingna.bsky.social!
🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/
Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!
Fee waivers available thanks to funding from @bioimagingna.bsky.social!
🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/
May 8, 2025 at 2:39 PM
💻 Apply to our beginner-friendly Boston Bioimage Analysis Course!
Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!
Fee waivers available thanks to funding from @bioimagingna.bsky.social!
🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/
Get started with Python and learn to analyze fluorescence microscopy images — no coding experience required!
Fee waivers available thanks to funding from @bioimagingna.bsky.social!
🗓️ Apply June 1st!
iac.hms.harvard.edu/bobiac/2025/
Reposted by QI@CSHL
‼BREAKING‼
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!
Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!
Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025
April 22, 2025 at 2:55 PM
‼BREAKING‼
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!
Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025
We’ve secured new funding for the Boston Bioimage Analysis Course (BoBiAC) this July at Harvard Med School! Course fees down 37%, with fee waivers for academic applicants, for an intensive hands-on intro to bioimage analysis with Python!
Apply by June 1st!
iac.hms.harvard.edu/bobiac/2025
Reposted by QI@CSHL
Slick t-shirt design for @qiatcshl.bsky.social made by @sciencedoodles.bsky.social featuring fan favorite the bench scope
April 7, 2025 at 4:29 PM
Slick t-shirt design for @qiatcshl.bsky.social made by @sciencedoodles.bsky.social featuring fan favorite the bench scope
Reposted by QI@CSHL
Happy Expansion Microscopy Day at Quantitative Imaging @qiatcshl.bsky.social
April 7, 2025 at 9:30 PM
Happy Expansion Microscopy Day at Quantitative Imaging @qiatcshl.bsky.social
Reposted by QI@CSHL
Our latest preprint www.biorxiv.org/content/10.1..., describes Willi Stepp’s project to make smart microscopy even gentler by doing event detection in phase contrast. We developed neural networks to detect mito-LD and mito-lysosome contacts, as well as mitochondrial pre-fission constrictions.
April 6, 2025 at 11:44 AM
Our latest preprint www.biorxiv.org/content/10.1..., describes Willi Stepp’s project to make smart microscopy even gentler by doing event detection in phase contrast. We developed neural networks to detect mito-LD and mito-lysosome contacts, as well as mitochondrial pre-fission constrictions.
Reposted by QI@CSHL
Light sheet baby!! QI2025
April 6, 2025 at 12:59 AM
Light sheet baby!! QI2025
Congratulations to students Jana & Michal for winning the Stayin' Alive challenge: acquiring a live cell time lapse with minimal photodamage! #stayinalive
April 5, 2025 at 4:57 PM
Congratulations to students Jana & Michal for winning the Stayin' Alive challenge: acquiring a live cell time lapse with minimal photodamage! #stayinalive
Reposted by QI@CSHL
Celebrating the last analysis lab at @qiatcshl.bsky.social in style. Friday night disco music (🤮) and bioimage analysis (😃)
April 5, 2025 at 1:35 AM
Celebrating the last analysis lab at @qiatcshl.bsky.social in style. Friday night disco music (🤮) and bioimage analysis (😃)
Our first prize winners for their confocal data presentation: 'Pinhole Pros' Federico & Naly!
April 4, 2025 at 1:46 PM
Our first prize winners for their confocal data presentation: 'Pinhole Pros' Federico & Naly!
Reposted by QI@CSHL
Analysis team cooking up some cellprofiler magic at @qiatcshl.bsky.social
March 29, 2025 at 7:50 PM
Analysis team cooking up some cellprofiler magic at @qiatcshl.bsky.social
Congratulations to students @nancypaniagua.bsky.social & Michal for placing 1st & 2nd place in our @ilastik-team.bsky.social pixel classifier challenge to segment with the least amount of annotations! #lazyannotationsftw
April 3, 2025 at 2:44 PM
Congratulations to students @nancypaniagua.bsky.social & Michal for placing 1st & 2nd place in our @ilastik-team.bsky.social pixel classifier challenge to segment with the least amount of annotations! #lazyannotationsftw
The students (totally) loved our TIRF lab! Check out this fluorescein solution sample we used to visualize internal reflection on the scope - 📸 by student Augusto Berrocal
April 2, 2025 at 1:49 PM
The students (totally) loved our TIRF lab! Check out this fluorescein solution sample we used to visualize internal reflection on the scope - 📸 by student Augusto Berrocal
Our image analysis expert instructors, @bethcimini.bsky.social, @damiandn.bsky.social, @florianjug.bsky.social & Hunter Elliott, are in full swing!
March 31, 2025 at 3:28 PM
Our image analysis expert instructors, @bethcimini.bsky.social, @damiandn.bsky.social, @florianjug.bsky.social & Hunter Elliott, are in full swing!
It's TIRF time again at QI!!! 🎉 🔬Check out @jencwaters.bsky.social's infamous TIRF demo to understand the principle behind total internal reflection vs refraction! #gonetirfing #criticallyawesome
March 31, 2025 at 3:22 PM
It's TIRF time again at QI!!! 🎉 🔬Check out @jencwaters.bsky.social's infamous TIRF demo to understand the principle behind total internal reflection vs refraction! #gonetirfing #criticallyawesome
Reposted by QI@CSHL
Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...
March 29, 2025 at 2:42 PM
Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...
Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...
March 29, 2025 at 2:42 PM
Our openSPIM is officially up and running to image the latest catch of the day! Fueled by pymmcore-plus & pymmcore-gui! 💪⚡🔬 pymmcore-plus.github.io/pymmcore-plus/ github.com/pymmcore-plu...
I spy with my little eye...a sneak peek of our light sheet microscopy lab samples! Perks of being a
@cshlnews.bsky.social course is access to lots of great sample collecting spots! #catchoftheday #tardigrades
@cshlnews.bsky.social course is access to lots of great sample collecting spots! #catchoftheday #tardigrades
March 29, 2025 at 2:35 PM
I spy with my little eye...a sneak peek of our light sheet microscopy lab samples! Perks of being a
@cshlnews.bsky.social course is access to lots of great sample collecting spots! #catchoftheday #tardigrades
@cshlnews.bsky.social course is access to lots of great sample collecting spots! #catchoftheday #tardigrades
Reposted by QI@CSHL
4 out of 16 ❤️❤️❤️🔬🔬🔬🔬🔬 @qiatcshl.bsky.social
March 29, 2025 at 1:48 PM
4 out of 16 ❤️❤️❤️🔬🔬🔬🔬🔬 @qiatcshl.bsky.social
Reposted by QI@CSHL
Another wonderful @sciencedoodles.bsky.social creation!
March 29, 2025 at 12:09 AM
Another wonderful @sciencedoodles.bsky.social creation!
After learning about PSFs, our students are excited about the best microscopy model system: beads! Thanks @leicamicrosystems.bsky.social, @nikonmicro.bsky.social, & ASI for supporting our course! #fluorescentbeads #TheBeadles
March 28, 2025 at 8:10 PM
After learning about PSFs, our students are excited about the best microscopy model system: beads! Thanks @leicamicrosystems.bsky.social, @nikonmicro.bsky.social, & ASI for supporting our course! #fluorescentbeads #TheBeadles
Our new course logo, by @sciencedoodles.bsky.social
March 28, 2025 at 7:58 PM
Our new course logo, by @sciencedoodles.bsky.social
Reposted by QI@CSHL
March 28, 2025 at 7:10 PM
Reposted by QI@CSHL
Demonstrating how local environment impacts fluorescence 🔬🧪🥼@qiatcshl.bsky.social
March 26, 2025 at 2:53 AM
Demonstrating how local environment impacts fluorescence 🔬🧪🥼@qiatcshl.bsky.social
Full calendar, great students, dedicated instructors & TAs, and nonstop learning! 🔬🖥️ 📊#microscopybootcamp
March 27, 2025 at 6:46 PM
Full calendar, great students, dedicated instructors & TAs, and nonstop learning! 🔬🖥️ 📊#microscopybootcamp