ProteomicsNews (Ben Orsburn)
@proteomicsnews.bsky.social
Assistant Professor at the University of Pittsburgh. What?? Previous industry CSO. Proteomics researcher with time consuming hobbies in scientific outreach. Opinions are often loud and exclusively my own. www.proteomics.rocks (he/him/his/dude)
Reposted by ProteomicsNews (Ben Orsburn)
Proteome-wide in silico screening for human protein-protein interactions www.biorxiv.org/cont...
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#proteomics #prot-preprint
November 26, 2025 at 2:20 PM
Proteome-wide in silico screening for human protein-protein interactions www.biorxiv.org/cont...
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#proteomics #prot-preprint
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#proteomics #prot-preprint
Prosit-PTM!! proteomicsnews.blogspot.com/2025/11/pros...
Prosit-PTM! Deep learn modified peptides???
We all know other great protein informatics teams are working on the holy grail for DIA proteomics - deep learning and prediction of modif...
proteomicsnews.blogspot.com
November 26, 2025 at 2:43 PM
Prosit-PTM!! proteomicsnews.blogspot.com/2025/11/pros...
I was like “…how do you make electro spray high resolution…”? www.mdpi.com/1420-3049/30...
www.mdpi.com
November 26, 2025 at 2:42 PM
I was like “…how do you make electro spray high resolution…”? www.mdpi.com/1420-3049/30...
Reposted by ProteomicsNews (Ben Orsburn)
We wrapped up #THEProteomicsShow Alt Proteomics season with Tim Cleland @paleoproteomicist.bsky.social talking paleoproteomics with me and Ben @proteomicsnews.bsky.social. Won't lie, this season was a blast talking about less typical "proteomics". Find it wherever you find fine podcasts or here.
Ep 94 - Alt Proteomics - Dr. Timothy Cleland by The Proteomics Show
For the final episode of the US HUPO sponsored "Alt Proteomics" series highlighting alternative proteomics things, Ben and Ben sit down to talk with Dr. Timothy Cleland, Smithsonian Institution.Keywor...
creators.spotify.com
November 18, 2025 at 7:13 PM
We wrapped up #THEProteomicsShow Alt Proteomics season with Tim Cleland @paleoproteomicist.bsky.social talking paleoproteomics with me and Ben @proteomicsnews.bsky.social. Won't lie, this season was a blast talking about less typical "proteomics". Find it wherever you find fine podcasts or here.
Guess what MS proteomics people! pubs.acs.org/doi/10.1021/...
November 24, 2025 at 8:29 PM
Guess what MS proteomics people! pubs.acs.org/doi/10.1021/...
Reposted by ProteomicsNews (Ben Orsburn)
In case you missed the live #THEProteomicsShow with me and Ben Orsburn @proteomicsnews.bsky.social, it was pretty fun. HUGE thanks to the organizers of #HUPO2025 for inviting us, and for Ken Weke (Univ. of Victoria) for being our guest. Definitely check it out wherever you get podcasts, or here:
The Proteomics Show • A podcast on Spotify for Creators
Ben Orsburn and Ben Neely co-host a podcast series in a “fireside chat” format with prestigious proteomics researchers. The guests are great, the hosts are questionable.
anchor.fm
November 14, 2025 at 2:03 PM
In case you missed the live #THEProteomicsShow with me and Ben Orsburn @proteomicsnews.bsky.social, it was pretty fun. HUGE thanks to the organizers of #HUPO2025 for inviting us, and for Ken Weke (Univ. of Victoria) for being our guest. Definitely check it out wherever you get podcasts, or here:
Reposted by ProteomicsNews (Ben Orsburn)
Excited to see our journal poster at #HUPO2025!
Big thanks to EiC Prof. Dr. Jens R. Coorssen for helping put it up and promoting the journal, and to EBM Dr. Benjamin Orsburn for his support and stopping by. 🧬🥼
@bskytdp.bsky.social
@proteomicsnews.bsky.social
#Proteomics #Proteomes #Proteoforms
Big thanks to EiC Prof. Dr. Jens R. Coorssen for helping put it up and promoting the journal, and to EBM Dr. Benjamin Orsburn for his support and stopping by. 🧬🥼
@bskytdp.bsky.social
@proteomicsnews.bsky.social
#Proteomics #Proteomes #Proteoforms
November 14, 2025 at 2:43 AM
Excited to see our journal poster at #HUPO2025!
Big thanks to EiC Prof. Dr. Jens R. Coorssen for helping put it up and promoting the journal, and to EBM Dr. Benjamin Orsburn for his support and stopping by. 🧬🥼
@bskytdp.bsky.social
@proteomicsnews.bsky.social
#Proteomics #Proteomes #Proteoforms
Big thanks to EiC Prof. Dr. Jens R. Coorssen for helping put it up and promoting the journal, and to EBM Dr. Benjamin Orsburn for his support and stopping by. 🧬🥼
@bskytdp.bsky.social
@proteomicsnews.bsky.social
#Proteomics #Proteomes #Proteoforms
Reposted by ProteomicsNews (Ben Orsburn)
PXD055167 🚨
Mutation of a RAS(ON) G12C-selective inhibitor overcomes acquired resistance to KRAS-GTP inhibitors in NSCLC preclinical models.
🚨 New dataset alert! 🚨
Mutation of a RAS(ON) G12C-selective inhibitor overcomes acquired resistance to KRAS-GTP inhibitors in NSCLC preclinical models.
🚨 New dataset alert! 🚨
November 8, 2025 at 11:00 AM
PXD055167 🚨
Mutation of a RAS(ON) G12C-selective inhibitor overcomes acquired resistance to KRAS-GTP inhibitors in NSCLC preclinical models.
🚨 New dataset alert! 🚨
Mutation of a RAS(ON) G12C-selective inhibitor overcomes acquired resistance to KRAS-GTP inhibitors in NSCLC preclinical models.
🚨 New dataset alert! 🚨
Reposted by ProteomicsNews (Ben Orsburn)
Deciphering microbial and metabolite dynamics in rice noodle fermentation: A metagenomic and untargeted metabolomic approach #FoodChem #MassSpec www.sciencedirect.com/science/arti...
Deciphering microbial and metabolite dynamics in rice noodle fermentation: A metagenomic and untargeted metabolomic approach
Inoculated fermentation accelerates rice noodle production and improves quality, but the underlying microbe-metabolite dynamics remain unclear. This s…
www.sciencedirect.com
November 8, 2025 at 11:35 AM
Deciphering microbial and metabolite dynamics in rice noodle fermentation: A metagenomic and untargeted metabolomic approach #FoodChem #MassSpec www.sciencedirect.com/science/arti...
Reposted by ProteomicsNews (Ben Orsburn)
I'm excited to share new results at #HUPO2025!
I’ll be presenting our latest work on a next-generation DIA search and FDR pipeline that enables sensitive, accurate and scalable proteomic analysis — in just a fraction of the time required by current algorithms.
📍 Poster PV.01.009 — Monday
I’ll be presenting our latest work on a next-generation DIA search and FDR pipeline that enables sensitive, accurate and scalable proteomic analysis — in just a fraction of the time required by current algorithms.
📍 Poster PV.01.009 — Monday
November 8, 2025 at 12:28 PM
I'm excited to share new results at #HUPO2025!
I’ll be presenting our latest work on a next-generation DIA search and FDR pipeline that enables sensitive, accurate and scalable proteomic analysis — in just a fraction of the time required by current algorithms.
📍 Poster PV.01.009 — Monday
I’ll be presenting our latest work on a next-generation DIA search and FDR pipeline that enables sensitive, accurate and scalable proteomic analysis — in just a fraction of the time required by current algorithms.
📍 Poster PV.01.009 — Monday
Reposted by ProteomicsNews (Ben Orsburn)
A De Novo Algorithm for Allele Reconstruction from Oxford Nanopore Amplicon Reads, with Application to CYP2D6 https://www.biorxiv.org/content/10.1101/2025.11.06.687066v1
November 8, 2025 at 12:47 PM
A De Novo Algorithm for Allele Reconstruction from Oxford Nanopore Amplicon Reads, with Application to CYP2D6 https://www.biorxiv.org/content/10.1101/2025.11.06.687066v1
Who is on their way to Toronto for the Human Proteomics World Congress! Wooooohooooo!!
November 8, 2025 at 12:55 PM
Who is on their way to Toronto for the Human Proteomics World Congress! Wooooohooooo!!
I have a relationship with one vendor where they commonly send me information about products I've never heard of. Every year or two I try to get a mass spec quote, never get it, and buy somebody else's fancy vacuum chamber. It is somehow funnier every single time I get their sales thing.
November 3, 2025 at 9:17 PM
I have a relationship with one vendor where they commonly send me information about products I've never heard of. Every year or two I try to get a mass spec quote, never get it, and buy somebody else's fancy vacuum chamber. It is somehow funnier every single time I get their sales thing.
Wait. It this everyone? Not just me?
October 23, 2025 at 6:03 PM
Wait. It this everyone? Not just me?
US HUPO ABSTRACT DEADLINE IS TOMORROW 10/24/2025!! www.ushupoconference.org/abstract-sub...
Abstract Submissions | US HUPO 2026 Conference
www.ushupoconference.org
October 23, 2025 at 1:58 PM
US HUPO ABSTRACT DEADLINE IS TOMORROW 10/24/2025!! www.ushupoconference.org/abstract-sub...
Are you going to the International Human Proteomics Organization World Congress? Are you traveling with your (electric?) guitar? Do you have a few free minutes on Monday early afternoon? I have a great idea! Please reach out. Bonus points if you tune down to drop C.
October 22, 2025 at 4:25 PM
Are you going to the International Human Proteomics Organization World Congress? Are you traveling with your (electric?) guitar? Do you have a few free minutes on Monday early afternoon? I have a great idea! Please reach out. Bonus points if you tune down to drop C.
proteomicsnews.blogspot.com/2025/10/its-... -- Monday November 10th at 2pm! Main exhibit hall! Kebab vendors watch out, I'm heading to Toronto with secret special guest(s?)
It's official! The Proteomics Show will be live at International HUPO!
Since no one asked for it (and ASMS ignored me)! THE Proteomics Show will record live at International HUPO on Monday, November 10th. Mai...
proteomicsnews.blogspot.com
October 14, 2025 at 10:45 AM
proteomicsnews.blogspot.com/2025/10/its-... -- Monday November 10th at 2pm! Main exhibit hall! Kebab vendors watch out, I'm heading to Toronto with secret special guest(s?)
Reposted by ProteomicsNews (Ben Orsburn)
msBayesImpute: A Versatile Framework for Addressing Missing Values in Biomedical Mass Spectrometry Proteomics Data www.biorxiv.org/cont...
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October 7, 2025 at 9:40 AM
msBayesImpute: A Versatile Framework for Addressing Missing Values in Biomedical Mass Spectrometry Proteomics Data www.biorxiv.org/cont...
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#proteomics #prot-preprint
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#proteomics #prot-preprint
Okay y’all. I’m at a complete loss. DIA is better on EVERYTHING on my Ultra2 except plasma digests. Neat, PC, PCA-N. DDA (pasef) works better. Coisolation FDR artifact? Anyone else see this?
October 6, 2025 at 7:52 PM
Okay y’all. I’m at a complete loss. DIA is better on EVERYTHING on my Ultra2 except plasma digests. Neat, PC, PCA-N. DDA (pasef) works better. Coisolation FDR artifact? Anyone else see this?
GO FAST with InfinDIA!! proteomicsnews.blogspot.com/2025/10/tire...
Tired of slow DIA search times? Try DIA-NN 2.3 with InfinDIA!
Is your awesome new instrument generating so much data that you can't process it fast anymore? My data density has jumped about 5x from my...
proteomicsnews.blogspot.com
October 2, 2025 at 11:01 AM
GO FAST with InfinDIA!! proteomicsnews.blogspot.com/2025/10/tire...
Reposted by ProteomicsNews (Ben Orsburn)
The WSJ Editorial Board is sick of RFK too.
"What’s going on here has less to do with healthcare than with a campaign by the plaintiffs bar."
Apparently RFK's trying to influence the appeals for a case his buddies lost against Tylenol.
www.wsj.com/opinion/tyle...
"What’s going on here has less to do with healthcare than with a campaign by the plaintiffs bar."
Apparently RFK's trying to influence the appeals for a case his buddies lost against Tylenol.
www.wsj.com/opinion/tyle...
Opinion | Trump, Tylenol and the Plaintiffs Bar
The acetaminophen link to autism is based on weak evidence pushed by RFK Jr. and his legal allies.
www.wsj.com
September 26, 2025 at 9:26 AM
The WSJ Editorial Board is sick of RFK too.
"What’s going on here has less to do with healthcare than with a campaign by the plaintiffs bar."
Apparently RFK's trying to influence the appeals for a case his buddies lost against Tylenol.
www.wsj.com/opinion/tyle...
"What’s going on here has less to do with healthcare than with a campaign by the plaintiffs bar."
Apparently RFK's trying to influence the appeals for a case his buddies lost against Tylenol.
www.wsj.com/opinion/tyle...
Reposted by ProteomicsNews (Ben Orsburn)
Great conversation! Lots of fun! Thank you @proteomicsnews.bsky.social and @benneely.com for the invitation! #TheProteomicsShow. And we talked #HUPO2025 for which the regular registration deadline is tomorrow (Sept. 26) #TeamMassSpec #Proteomics #Bioinformatics
Continuing our highlight of the upcoming #HUPO2025 in TO, we had @mlaval6.bsky.social on #THEProteomicsShow with me and Ben @proteomicsnews.bsky.social. We don’t know hockey, but we still talked cool bioinformatics stuff. Find it wherever you find fine podcasts or here anchor.fm/theproteomic...
September 25, 2025 at 7:06 PM
Great conversation! Lots of fun! Thank you @proteomicsnews.bsky.social and @benneely.com for the invitation! #TheProteomicsShow. And we talked #HUPO2025 for which the regular registration deadline is tomorrow (Sept. 26) #TeamMassSpec #Proteomics #Bioinformatics
That was fast!
Continuing our highlight of the upcoming #HUPO2025 in TO, we had @mlaval6.bsky.social on #THEProteomicsShow with me and Ben @proteomicsnews.bsky.social. We don’t know hockey, but we still talked cool bioinformatics stuff. Find it wherever you find fine podcasts or here anchor.fm/theproteomic...
September 25, 2025 at 7:00 PM
That was fast!
I snapped a picture of everyone (including organizers from both @us-hupo.org and @hupo-org.bsky.social )from today's workshop. Thanks for inviting me. It's a topic I wouldn't have thought of on my own.
September 23, 2025 at 7:15 PM
I snapped a picture of everyone (including organizers from both @us-hupo.org and @hupo-org.bsky.social )from today's workshop. Thanks for inviting me. It's a topic I wouldn't have thought of on my own.